Lytechinus variegatus (green sea urchin): 121426885
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Entry
121426885 CDS
T11173
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
KO
K12857
Prp8 binding protein
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121426885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121426885
Spliceosome [BR:
lvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121426885
Complex C
U5 SnRNP specific factors
121426885
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_Vps41
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
WD40_like
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
121426885
NCBI-ProteinID:
XP_041479227
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Position
1:complement(87722133..87748030)
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AA seq
349 aa
AA seq
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MPVMDHKRKAEEGALVAVKRSKHHELVAASNQQNAVIQAGPPRLSSMTAAIMLLTGHEGE
IFSARFHPNGQTLASGSFDRSIFLWNVYGECENYGVLKGHQGAIMELHYNTDGSQIVSCA
TDKMVCLWDTETGARVKRMRGHTSFVNSCYYARRGPSLVTSGSDDGTIKIWDTRKRGCAQ
TFQSTYQVLAVSFNDTSDQIISGGIDNDIKVWDLRKNGLLYKMSGHSDSVTGLELSPDGS
YIVSNSMDNTLRIWDVRPFASPERCVKIFQGHQHNFEKNLLRCSWSPDGSKVAAGSADRH
VYVWDTTSRRILYKLPGHVGSVNQIDFHPHEPIILSCSSDKQIYLGEIL
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgatggaccacaaacggaaagcagaggaaggtgctttagttgcagttaaaaga
tcgaagcatcatgaacttgtggctgcaagcaatcaacaaaatgctgtcatacaagcgggg
ccacctcgcctatctagcatgactgctgctatcatgctattgactggccatgagggagag
atcttcagtgctagattccatcctaatggacagacactggcatcgggttcatttgacagg
tctatctttttatggaatgtgtatggagagtgtgagaactatggagtattaaagggccac
caaggtgctatcatggagctccattataacactgatggcagtcagattgtgtcctgtgca
acagataagatggtatgtctatgggatacagagacaggagctagggtgaagagaatgaga
ggacacacatcatttgtcaattcatgttactatgctaggagaggtccttcattagtcacc
agtggtagtgatgatggaaccatcaaaatttgggatacaagaaaacggggctgtgcccag
acgttccaaagtacttaccaggtcttagctgtttccttcaatgataccagcgaccagatt
atctccggtggtattgacaatgatatcaaggtgtgggatctgagaaagaatggactactc
tacaagatgtctggtcatagtgactctgtgactgggttagaactaagtcctgatgggtcc
tatattgtttcaaactccatggataatacgttacgaatttgggatgtacgaccgtttgct
tcaccagaaagatgtgtgaagatatttcagggacaccaacacaactttgaaaagaattta
ttacgatgttcatggtctcctgatggtagtaaggttgcagctggatcagcagatcgtcat
gtctatgtatgggataccacatctaggagaatcctatacaagctacctggccatgttggc
tctgtcaatcagattgacttccatcctcatgaacctatcatcctctcctgttccagtgat
aagcagatctacctgggggaaatcttgtga
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