Lytechinus variegatus (green sea urchin): 121427220
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Entry
121427220 CDS
T11173
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121427220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121427220
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121427220
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
NBCH_WD40
Beta-prop_Vps41
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
121427220
NCBI-ProteinID:
XP_041479438
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Position
14:complement(12051821..12096494)
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AA seq
1092 aa
AA seq
DB search
MEAAGGQPRHQGHQSQQGHQGQFFHQPRLPYYQIKPNYYNNHHRRQHSHHRHQEHVPTNA
TTFDQKRMKNTLQRRTVDYNTSVIRYLQARIWQRDYKDARMIQPDHSYIGNLSLPHQMLD
NPINAVTTRFVRTSTNKVRCPIFCVVWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAH
ECAVRTMTWSRNDMWLLTGDDQGFIKYWQSNMNNVQMYQAHKDQAVRCASFAPSDSKFCT
CSDDGTVRIWDFLRCHEEKILRGHGADVRCVDWHPSKGIVVSGSKDSQQPVKLWDPRTGE
ALCTLHAHKSTVMSAKWNMNGNWLLTASRDHLVKLFDIRMMKELFTFRGHKKEATAIAWH
PIHEDMFVSGGSDGGILFWQVGHDKEIGGIEEAHESIIWGLAWHPLGHMLCSGSNDHSTK
FWTRNRPGDRMRDRYNLNTLPIGTSEDLLEFDDDTTSLPVIPGMGLEYGVADHLKKDEQV
PMQTTEENLDTSIPGLDSSIEELEKLKPKPQRKVPYARPVPQNFLDEWEANKAPGVAPNI
EEEKRKRKEEEEKKKQEEERKRIEEEAKRRAEEEKKRKETELKMKMERPENYGLVGVPDF
GGNPIEVIKFIARTQGPKAAEQALVNSIHSNLPSGTVLPIIKPNVNPITVLLQEGHIPPH
FAKQLRAGGLLPFEAVRWLDMKEGKTEKPLPAHLAKLPIAVPPTKKAKVANTPDKPAKTK
KEKETSKAAKAPSPEGDSTPKNGTDSKGLLGVKPSSAGPKPSGAGLLPDPGKSGGLLPEP
AGTPSTKPKPTPLMQVQPTEALLPEPQPTEGTGDVDMRQAPRHGDVDMRQGPMGGSSAPP
LEPRSGPMSGPQIRPGPPVQEMQRRNGPVMRQSEGFGQDRDERIPSAGHGDVDLRQEPQH
LENMGDRDLRQGPPQHFNGPSSDPFDQQMPMHDVDNRRFPPTNPEDDTLPGLGAEDQDLR
NKPVPLMSIGNPMSRTQEPQDTDFRHPNPGEYRNPARDFDERQLPIMDHEEFPPLPHRKR
PWEEEEMGGQEDPTLWEENPEEMEEGPGFRGRGGWGRGMRGRGGFRPDMGRGGFRGRGRG
WGRGRGRGRGMW
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagcggggggccagcccaggcatcagggccatcagagccagcaaggccaccag
ggacagttctttcatcagccgagattaccatattaccaaatcaagccaaactattacaat
aatcaccatcgcagacagcatagccatcacagacatcaggagcatgtaccaacaaatgcg
acaacttttgaccagaagaggatgaaaaataccctgcaacggagaacggtcgattacaat
acttcagtcatcagatatctccaggcaaggatttggcaacgggactacaaagacgcaagg
atgatacagccagatcactcatatataggaaatctgagtttacctcatcagatgttggac
aaccctattaatgcagtaacaactcgatttgtaaggacatcaaccaataaggtccgatgc
ccaatattctgtgttgtgtggacccctgaaggaaggagactggttactggagcatccagc
ggagagtttactttgtggaacgggcttacctttaattttgaaaccattcttcaggcccat
gagtgtgctgtcagaacgatgacgtggagtcgcaatgacatgtggctgctgacgggagac
gaccagggtttcatcaagtattggcagtccaacatgaacaacgtgcagatgtaccaggcc
cataaagaccaggctgtacgatgcgcaagctttgcaccgtcagattccaagttctgcaca
tgctcagacgatgggaccgttcgtatctgggactttctccgctgtcacgaagagaagatc
cttagaggtcatggtgccgatgtccgttgcgtcgactggcatcctagcaaaggcatcgtc
gtatccggcagcaaggactcccagcaaccggtcaaactctgggaccctcgaacaggggaa
gcactgtgcaccctccatgctcacaagtcgacagtcatgtcagcaaagtggaacatgaat
ggcaactggcttctcacagcatctagggatcatctggtcaagctattcgatatccgcatg
atgaaggagttattcacattcaggggccataagaaagaagctacagccatagcatggcat
cccatacatgaagacatgtttgtatctggtggctcggatggtggcatcctcttctggcaa
gtagggcatgacaaggagattggtggtattgaagaggcacacgaatctatcatatggggt
ttggcttggcatccattaggccacatgctgtgctcaggatccaacgatcattcaacgaaa
ttctggacaagaaacaggcctggtgataggatgcgagacaggtataatctgaacactcta
cccatcggaacatctgaagacctgttggagtttgatgatgacacaacctcattgccagtt
attcccgggatgggattagaatatggtgttgcagaccatctcaagaaagatgaacaagtt
cccatgcaaacaacagaggagaacctagacacctccatccctggtcttgattcgtccatc
gaagagctagagaaactgaaacccaaaccccagcgcaaggtcccctacgccaggccagtc
ccacagaacttccttgatgaatgggaggccaacaaggcaccgggcgtggcaccaaacatc
gaggaagagaaacggaagaggaaagaggaagaggagaagaagaaacaggaggaggagagg
aagagaatcgaggaagaggcaaagagaagagctgaggaagaaaaaaagaggaaggagaca
gaattaaagatgaaaatggagagaccagagaattatggcctagtcggcgttccagacttt
ggaggtaatcccatagaggtcatcaagtttattgccaggacacagggacctaaagcagct
gaacaagctctggtcaattcaatccactcaaacctcccctcaggtactgtgttacccatc
atcaaaccaaatgttaatccaatcactgtcctacttcaagaaggccacatccctccgcac
ttcgccaagcaactgagggctggaggtctcctgccatttgaagcagtaagatggcttgac
atgaaggagggaaaaacggaaaagcctctgccagctcacctagccaagctgcccattgcc
gttccaccaaccaaaaaggccaaggttgccaacactcctgacaaaccagcgaaaacgaaa
aaggaaaaagaaacgtccaaggctgcaaaggcaccttctcctgaaggggattccactcct
aagaatgggacagatagtaaaggtctgctaggagtgaagccgtcaagtgcaggaccaaaa
ccatcaggtgctggtttgttgccagatcctggtaaaagtggaggtttgttgcctgagcca
gcaggcactccgagtacaaagccaaaacccacaccacttatgcaggtgcaaccaacggaa
gcattactgcctgaaccgcaaccaacagaaggaacgggtgatgttgatatgagacaagcc
cctcgccatggggatgttgatatgagacaaggaccaatgggtggatcatcagccccaccg
ctagaaccgaggagtggccccatgagtggacctcaaataagaccaggaccacccgtgcag
gagatgcagcggagaaatggacctgttatgagacaatctgaaggctttggacaggaccgc
gatgagcgaattccaagtgcaggacatggggatgttgatttgcggcaagagcctcagcac
ttagaaaacatgggagacagagacctccggcaaggtcctccgcagcattttaatgggccc
agtagtgatccttttgatcaacaaatgcccatgcatgatgtggacaatcgtaggtttcct
ccaacaaaccccgaggatgatacactccctgggcttggtgcagaagaccaagacctacgt
aacaaacctgttcctttgatgtcaattggaaaccccatgtcaagaactcaagaacctcag
gatacagattttagacatccaaaccccggtgaatacagaaaccctgccagagatttcgat
gagagacaactcccaataatggatcatgaggaattcccacctttgcctcaccggaagcga
ccgtgggaagaagaggaaatgggtgggcaggaagatccaacactttgggaagagaatcct
gaagagatggaggaaggaccagggtttagaggtcgtggtggatggggtagggggatgaga
ggacgtggaggatttagaccggatatgggaaggggtggcttcaggggtaggggtcgaggc
tggggaagaggaaggggtagggggaggggaatgtggtag
DBGET
integrated database retrieval system
