Lytechinus variegatus (green sea urchin): 121427786
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Entry
121427786 CDS
T11173
Name
(RefSeq) cleavage stimulation factor subunit 1-like
KO
K14406
cleavage stimulation factor subunit 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121427786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121427786
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121427786
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
CSTF1_dimer
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SCAP
Ge1_WD40
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_2nd
Cytochrom_D1
Beta-prop_EDC4L
Beta-prop_NWD2_C
VID27
Motif
Other DBs
NCBI-GeneID:
121427786
NCBI-ProteinID:
XP_041480281
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Position
14:complement(5177430..5190961)
Genome browser
AA seq
423 aa
AA seq
DB search
MSLATMTIREKDQMYRLIISQLLHDGYHEISQQLSKIVCPVPDCPPSDRLQKVVQLGLRA
EPDRPPPVLISDTVAPASSIDLDFDTEVQSQAPEAAQYETCYVTAHKGPCRIAAWSNDGQ
LIATGSTDASIKILDVERMLAKSAASAPTTDTVESHPVIRTLYDHVDDITALDFHPSWPI
LVSGGKDCTVKLFDFSKSTVKKSAKSIQEVSPIRFTTFHPCGDFLLVATEHPTLRLYDVN
TAQCFVSCNPSDQHKAMMNMMEYSPLGNMYASCSNDGSIKLWDGVSNRCVNTLKDAHGGA
PVCSVRFSRNGKYVLSSGKDSLVKLWEIATSRTLITYTGAGSEQMKTNTQAVFNHTEDYV
FFPDEKTLSLCCWDSRNAERNKLLSLGHNNVVSCIIHSPTGPGFVTCSDDFRARFWYHRT
DSN
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcgcaacgatgactataagagaaaaggatcagatgtataggctgataattagt
caactacttcatgatggttaccatgagatttcacagcagctgagtaagattgtgtgtccg
gttcctgattgtccaccatcagatcgtcttcagaaagttgtacagctgggtcttagagca
gaacctgacagaccccctccagtcctaatatctgacacagttgctccagcttcatctatt
gatttggactttgatacagaggtgcaatcacaagcccccgaagcagcccagtacgagacc
tgctacgtcaccgctcataagggaccatgtcggatagctgcatggagcaatgatggtcag
ctgattgcaactggatcaacggatgcatcaatcaagatcctggatgtggagcgtatgtta
gcaaaaagtgcagcctcagcccctaccacagatacagtagaaagtcatcctgttatcagg
acgctatatgatcatgttgatgacatcacagcccttgactttcacccgtcatggcccatc
ctggtatcgggaggtaaagactgcactgttaaactctttgatttctcaaagtcaactgtc
aagaagtcggccaagtccatccaggaagtttccccgatcaggttcactacattccatccg
tgtggggatttcttactggttgcaacagaacacccaacgttgaggctgtatgatgtaaat
actgctcagtgctttgtgtcttgtaatcccagcgaccaacataaagctatgatgaatatg
atggaatacagtcctcttggcaacatgtatgcctcttgcagtaatgatggatctatcaaa
ctctgggatggtgtgagtaacaggtgtgtcaatacactcaaagatgctcatggaggagct
cctgtctgttctgttagattctcaagaaatggaaagtatgtgctatccagtggcaaagac
tccttggtgaaactttgggagatcgctaccagcagaacactcatcacatatacaggagcc
gggtctgagcagatgaagactaatacacaggctgtattcaaccacacagaggattatgta
ttctttcctgatgagaagacattgagtttatgttgctgggattcaaggaatgcagagagg
aacaagctgctatctctaggccacaacaatgtcgtcagttgcatcatccactcacctaca
ggacctggcttcgtgacgtgtagtgacgacttcagagctagattctggtatcatcgaaca
gactcgaactga
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