Lytechinus variegatus (green sea urchin): 121427826
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Entry
121427826 CDS
T11173
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1-like
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lvg04990
]
121427826
Domain-containing proteins not elsewhere classified [BR:
lvg04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
121427826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WHD_NWD1
Beta-prop_WDR41
DUF4062
NBCH_WD40
AAA_16
WDR90_beta-prop_4th
Beta-prop_CAF1B_HIR1
NACHT
Beta-prop_NWD2_C
Beta-prop_Aladin
NPHP3_N
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_IP5PC_F
AAA_22
Beta-prop_WDR75_2nd
ATPase_2
Beta-prop_IFT122_1st
nSTAND1
Beta-prop_EIPR1
Cytochrom_D1
WD40_RFWD3
AAA
NB-ARC
Torsin
Beta-prop_EMC1_N
NPHP3
nSTAND6
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
121427826
NCBI-ProteinID:
XP_041480329
LinkDB
All DBs
Position
1:89512145..89533592
Genome browser
AA seq
1708 aa
AA seq
DB search
MDSKLNCNPLSFRDKMESKLDCDPDGFRDLVLGETESLPDQESNTVRIFLSSTFTDMKEE
RNKLIREVFPELGRYCHEKMLEFEVVDMRWGVRDSATADHLTSFLCLNEIDRCKRMSQGP
YFVGILGDKYGYRPLNATISSGMFEKLMDTVSKDESISAEDVDLIRKWYVEDTNAIPPVY
VLQPITVHLPDYYDSSDLQKQSETRQKWWVIFDKMRKVFDLAATMARQEGVFTDEEMHEL
VMSVTEEEIRHGLKDNTNVEDTCIFFTRDFKDMEPSYKQKDSLSKFTDIQTDDDNQTLEF
VEQSQTLLTRLKKEYIPSVVPAQALHTFTVPWCDKGIDPIGCPGHAEYLEQMCDIFEHRM
KAMIDKKWEVQRSKVVNPVKSQLQRELLHHASFCKTKCSAFQGREDILSSIRSYLSSNVS
KPLVVHGISGSGKTSVMAMVARHSREWIEGCVTVLRFLGTSANSSTIHATLQSMCKQICY
AYGAPPLLSKHSSDFSELVQLFNKLIEMLPTKDKPLLLLFDSIDQLSSNNNAHKMNWLLK
TLPENVHVVVSMLPHEHNILDNIKKTLTDPRCYICMEVVGEENGIAIMNGWLKERNRRLN
NEQIKVVTDAFSKCPQPLFLKLLFEEFVTWPSYKSVEDVKLPTTVVDAINVMFQDLEDRH
GLIFVAHALGYLTAGKSGLTEAEIEDVLSCDDKVLNDVYQYWDPPVEGVVRIPPSVWKRL
HQDIGEFITERQAGGKTVIAWYHRQFIETAERRYLGDPQSKMDRHKVLADMFLGEYSRGK
IRPVRLERRKKDFPNADRLVSPQPLMFGENVFNLRKLHELPFHLMQCEMVNGIPEGMVQH
IMYNFEWILTKLRAFSFLELVNDFSTFDEESGILLEALYLSGSNLKEDPFCLAGQLLGRM
YDLMDKYPNIKKLLEGAKSWVRTTQHSLIIPRGACLIPPGGQLKTSLAGHPSRVEAIACT
GKGDVIVTVCKDANDYPMANVWDEENAELIHTLQIRAGSKASGALSLTISHDDRFVIFGC
QLLGMFELTSGECMWKLETGENHAVSSLQINETGSLAIGGSEKGSNVFIWDLNNGQLLTK
LEHPKTANFSFFESDDEILTGCQDGFFRHWSITSKECLHSFQAHKNNDMKVVAHARSVQT
LASGDSNGSIKLSRYVGKPSGPDVVLEGHRKAVTCLLVLSDDLLASGSADFTVRVWNMTE
GLALLKCEGHDGMVTCLWHWPADPKETGSKSILVSGSKDDFLKVWDLEPKDDKCPLITTL
EGHSSWISDVTGTKGRVLYSASNDKSAKMWVYTKETMIKRERHSGHAVVVKFTPDDSTVI
TSGQEGSVKFSSFYDCHVTRREAGFTSKLIFSRDGKKLIGGFKEEGRLRVWKLDQSTEEG
GDVFDLEGHEKGILWLVVGQDNEVVSASQDKMIKVWDLDTKSCRLTLKEHEAPVGHVKTV
TQETDSFIISTDAKGVLKFWKYDTGECLLSAKEHNASIRCLAVSSDGLYAVTGANDKQMI
LWSLSPNSFGQVVKHMPVHVSEVICCAFTHDSSKIVWGTHAGVEQLHVWHFLADDDQLLV
GHNHAIMDMCISSDDQYLVTASRDCTLKAWHLPTMEMLASFDCKSQIKNIDLVYGSEDRY
RLAAENKSGTVLILDMLLEKADRSDISFDHHTQLNETHHIPTSSDQNNGKHQSSYTNQQD
NGSNSASSEKSRSNSEGKKSKSAICMLY
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggattctaagctgaactgcaatccacttagtttcagggacaagatggaatctaagctg
gactgtgatccagatggtttcagggaccttgtgttaggtgagactgagtcccttccagat
caagaatcaaacacagtgaggatattccttagttcaactttcacagacatgaaggaggaa
aggaataagttgatcagggaggtgtttccagagcttggtagatactgccatgaaaagatg
cttgagtttgaagtggttgatatgagatggggtgtacgagatagtgccacagcagatcac
ctgacatcgttcctgtgccttaatgaaattgacaggtgtaaacgtatgtctcagggacct
tacttcgtgggtatcttaggtgataagtacggctaccggccactcaatgccaccatttcc
tcaggcatgtttgaaaagctcatggatactgtctcaaaagatgaaagcatctcggcagaa
gatgtagatctcatacggaagtggtatgtagaagacaccaatgctattccacctgtctac
gtactgcagcctatcactgtccatcttcctgactactatgattctagtgatttgcagaag
cagagtgagacaaggcagaagtggtgggtgatctttgataagatgaggaaggtgtttgat
ttagcagccaccatggctagacaagaaggtgtcttcactgatgaggaaatgcatgaactt
gttatgtctgtgactgaagaggagattcgtcatggattgaaagacaataccaatgttgaa
gatacttgtatcttcttcaccagagacttcaaagatatggaaccatcttataagcagaaa
gattctttgtctaagtttactgacattcaaactgatgatgacaatcaaactctagagttt
gttgagcagtcccagacgttactcacaaggctgaagaaagaatacattcccagtgtggta
ccagcccaagcactccataccttcactgtaccatggtgtgataaaggaattgaccccatt
ggttgcccggggcatgcagaatatcttgagcagatgtgtgacatctttgaacacagaatg
aaggccatgatagacaagaagtgggaagttcaaaggtcaaaggttgtgaatccagtcaaa
agtcagctccagagagaactgctacatcacgcatccttttgtaaaacaaaatgcagtgcc
tttcaaggaagggaagatatcctatcatccatcaggtcctacctctcttcaaacgtgtcc
aagcccctagttgtccatggtatatcaggatctgggaagacatcggtcatggctatggtt
gcaaggcactcaagagaatggattgaaggatgtgtaactgtactcaggtttctagggaca
tcagccaacagctctaccatccatgccacattgcagagcatgtgtaaacagatttgctat
gcttatggtgcaccaccactcctgtccaagcactcaagtgacttctcagaactggttcag
ctcttcaataagttgattgaaatgcttccaaccaaagataagcccctcctgctgctgttt
gacagtattgaccagctcagttccaataacaacgcccataagatgaactggcttctgaaa
acgctcccagaaaatgtccatgttgttgtgtctatgctgcctcacgaacacaacattctg
gacaacatcaagaagaccctgacagatcctagatgctatatttgcatggaagttgttggt
gaagagaatggaattgccatcatgaatggctggttgaaagaaagaaaccggaggttaaat
aatgaacaaataaaagtggtaactgatgctttcagtaagtgccctcagccactctttctt
aagctactctttgaggagtttgtaacatggccatcgtacaagtcagtagaagatgttaaa
cttcctaccactgtagtggatgctatcaatgtgatgtttcaggatcttgaagatcgtcat
gggcttatctttgtagctcatgctctgggttacctcactgcaggaaagagtggtctaact
gaagcagagatagaggatgtcctttcttgtgatgataaagttctcaatgatgtctatcag
tattgggatcctccagtggaaggggttgttcgtattccaccttcagtctggaagaggttg
catcaagacattggggaattcattacagaacgacaggctggtggaaaaacagtgattgct
tggtatcatagacagttcattgaaactgctgaaaggcgttaccttggtgacccacagtcc
aaaatggatagacataaagttcttgcagatatgtttcttggagaatacagcagagggaaa
atcaggccagttcgacttgagaggcgcaaaaaggatttcccaaatgcagaccgtcttgtc
tcacctcaacccctcatgtttggggagaatgtctttaatctcagaaaactgcatgagcta
ccttttcatctgatgcagtgtgaaatggtgaatggaatccctgagggtatggtgcagcat
atcatgtacaactttgagtggattctgaccaagttaagagcatttagctttctagaactt
gtgaatgatttctccacattcgatgaagaaagtggcattcttcttgaggccttgtacttg
tctggtagtaatctgaaagaagaccctttctgtttagcaggccagcttcttgggaggatg
tatgacctgatggacaagtaccccaatatcaaaaaattacttgaaggagctaagtcttgg
gtaaggactacccagcattctttaatcattccaagaggagcatgtctgatccctcctgga
ggacagttgaagacatcattggcaggtcatccatcaagagtagaagctattgcttgcact
ggcaaaggagatgtaatagtaacagtgtgcaaagatgccaatgactatcccatggctaat
gtttgggatgaagaaaatgcagagctcatacatactctgcaaatcagggcaggaagcaag
gcatctggtgcattatcccttaccatcagccatgatgatagattcgttatctttggttgt
cagctgttgggaatgtttgaactcaccagtggtgagtgcatgtggaaacttgagactggt
gaaaaccatgctgtcagttctctgcagatcaatgaaactggttcattagccattggtgga
tcagaaaaagggtcaaatgtctttatctgggacctcaataatggacagctcttgactaag
cttgaacaccctaaaactgctaacttttccttctttgaaagtgatgatgaaatactgact
ggttgccaggatggtttcttcagacactggtctatcacctctaaagagtgtcttcattca
ttccaagctcataagaacaatgacatgaaagtggttgcccatgcaaggtctgtgcagact
cttgcttctggtgatagcaatggatccatcaagctctctagatatgtaggcaaaccaagt
ggccctgatgtggtcctcgaaggtcacaggaaagctgttacttgtctcttggtgttatca
gatgatttacttgcttctgggtcagctgattttactgttcgtgtctggaatatgactgag
ggtttagctttgttgaaatgtgaaggtcatgatggtatggttacttgcctttggcactgg
ccagcagaccccaaggaaacagggtccaagtctatcttggtatcaggttctaaagatgac
tttctgaaggtttgggacctggagcctaaggatgataagtgtcctctcatcactacactg
gaaggacattcttcatggatctcagatgttactggaacaaagggaagagtgctttactct
gcttcaaatgacaaaagtgccaagatgtgggtctataccaaggaaacgatgattaagagg
gaaagacacagtggacatgcagttgttgtcaagtttactccggatgactccacagttata
accagtggtcaagagggatccgttaagttctctagtttctatgactgccatgtgacccgc
cgtgaagcaggatttacctccaagctgatcttcagcagagacggcaagaagttgattggt
ggatttaaagaggagggcaggcttcgtgtttggaaattagaccaatcaacagaggaaggt
ggagatgtgtttgatcttgaaggtcatgagaaaggcatcctatggttggtagttggacaa
gataatgaagttgtctctgcatcgcaggataagatgataaaggtctgggatttggatacc
aagtcatgcagacttactttgaaagaacatgaagctccagtaggacatgtaaagacagtg
acacaagagacagatagtttcataatatcaacagatgccaaaggagtcctcaagttctgg
aaatatgacacaggagaatgtcttctatctgccaaagagcacaatgcatccatacggtgt
cttgctgtatccagtgatggtctgtatgcagtgacgggtgccaatgacaagcagatgatc
ctttggtcgttgtctccaaactcctttggtcaagtggtcaagcatatgccagttcatgtg
tcagaggtgatctgttgtgcatttactcatgacagttctaagattgtctggggaacccat
gctggtgtggagcagcttcatgtatggcattttttggctgatgatgaccaactgctggtc
ggtcacaaccatgccatcatggatatgtgtatatcatcagatgaccagtatttggtgact
gcatcccgtgattgtaccttgaaagcttggcatcttcctaccatggagatgttggcatcc
tttgattgcaaatctcagatcaagaacatagacctggtctatggcagtgaggaccgctat
cgattggcagcagagaacaagtctggaacggttcttattcttgatatgctactagagaaa
gcagatagatctgacatcagctttgatcaccatacccagctcaatgagacacaccacatt
ccaacctcaagtgaccagaacaatggaaagcaccagtcatcgtatacaaaccagcaagac
aatggatcaaatagtgcatcttctgagaagtctagaagtaactcagaagggaagaagagt
aaatcagccatttgtatgctctactga
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integrated database retrieval system
