Lytechinus variegatus (green sea urchin): 121428491
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Entry
121428491 CDS
T11173
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121428491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121428491
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121428491
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121428491
mRNA degradation factors
3'-5' decay
Ski complex
121428491
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
DUF8363
Motif
Other DBs
NCBI-GeneID:
121428491
NCBI-ProteinID:
XP_041481057
LinkDB
All DBs
Position
15:6648907..6692907
Genome browser
AA seq
1267 aa
AA seq
DB search
MMASSHLEDLETKVSSLESDDVPPFSLLGLGLNGKSVAIPVTECQPESLPYTTTLPFGLP
PVIHDLPQRIDDFLNCPNQLPVHDVNKGQRKLARLANPANLYSVSLSTLQTTLQVERNAT
TGQLLGYKEVFIGDTCGTAKNSLSLTRQPGPLSEAIQGSTTNFPFMPGGLADEPFLDDDD
DTALGVDKLKEANDIDDLLTVPPGWKEGMTFKDQKKNDKAKDEERGVSKLIEVSGELGLD
DIMGTDDRFDFLEKETEEDRAKEKEKERQKETAKENAKSKDEELDKVLPEGNIKQKVDQT
KEPLEEKSWAINIDVSTPVDDFHKRVPVMAHQYPFELDIFQKQAVLKLENHQSVFVAAHT
SAGKTVVAEYAIALSMRHLTRTVYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQIKPEAS
CLVMTTEILRSMLYNGSDVIRDLEWVVFDEVHYINDSERGVVWEEVLIMLPDHVNIILLS
ATVPNTMEFADWVGRIKRKHIYVISTLKRPVPLEHFLYTGNSNKTSNELFLLVDAKKNFL
QQGYKQAVQAKKDRATKSSTGFGAKGTREGHFKSDKNVYMSVVEMLRKKEQLPIVCFTFS
KKRCNDNSTQLSNLDLTTNSEKSEITVFIKKSVDRLKGSDKKLPQVVLLTELLKRGIAVH
HSGILPILKEVVEMLFQRGLVKLLFATETFAMGVNMPARTVLFDSIKKHDGTNLRHLHPG
EYIQMAGRAGRRGLDTTGMVIILCKGDVPETSDLHYMMKGRPTKLESQFRLTYPMILNLL
RVEELRVEDMMKRSFSEFSTRKDADKHRKHIKDLQQKVKQIRDIDCYMCSDLESYYCTCK
ELHQLREETQKVVLSHPSGVKSLVPGRIIIIRNKRYQKNTLGVVLSSSGTSKDRKVKTLI
LCNPSDNDESITNETEVHMSPILKHSFWRPEGEPSHTVKDLLADDILGITTVKIKLDANK
IVENFNKRQIPRFRNDPPGQSAVLATQELLRLIETNPDGLDTLDPVRDLNIRDIDLVDKF
TTRDLVEKTVDKFNCTLCFNFQQHYADMCYRMKVQEDLKHYRYLLSDRSLLLLPEYHQRI
QVLKELNHIDKSKTIQLKGRVACEISNHELLITELVFQNILSLYPPDEIAALLSCMVFQE
RRCSEPELTESLENGVKRIKEEALRIGVLQHSCGVQMPAEDFVEQYRFGLTEVVYQWAKG
LEFSEITSLTDVTEGIIVRTIQRLDEVCRDVRNAARIVGDPILFSKMEEASQLIKRDIVF
TASLYTQ
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttcgtcacatttagaagatttagagaccaaggtttcctctttagaatcagat
gatgttcctcccttttcacttctgggacttggattaaatggaaagtcggttgctattcct
gtaactgaatgccaacctgaatcgctgccatataccaccactttgccttttggtttacct
cctgttatccatgacctgccacagaggatagatgacttccttaactgccctaatcagcta
cctgttcatgatgtcaacaagggtcaaaggaaattggcaaggttagcgaatccagctaat
ctgtactcagtgagcctaagcacattacaaaccacactgcaggtggaaaggaatgcaaca
acagggcaactacttggctacaaagaagttttcataggtgatacttgtgggacagcaaag
aacagcctctccctgactcgtcagcctggacctctctcagaagcaatccaaggcagtacc
accaacttccccttcatgccgggaggtctcgctgacgaacctttcctggacgacgatgat
gacactgctttaggtgttgataaactcaaggaggccaatgacattgatgatctcttgact
gtgccaccaggatggaaggagggaatgacctttaaggatcagaagaaaaatgataaggcc
aaagatgaggagagaggagtcagcaagctgatagaagtctctggagagcttggccttgat
gacatcatggggaccgatgatcgttttgacttcttggagaaggaaacagaagaggataga
gcgaaggagaaagaaaaagagagacaaaaggagacagcaaaggaaaatgcaaaatccaag
gatgaagaactcgataaggttttacctgaaggaaacatcaaacagaaggttgatcaaacg
aaagaacccctggaggagaagtcttgggctatcaacattgatgtcagtacaccagtggat
gactttcacaagagagttcctgttatggctcaccagtacccttttgagctggacatattc
caaaagcaagctgttctcaagcttgagaatcatcagagtgtttttgttgctgcccataca
tcagcaggaaagactgtggtagccgagtatgccatcgcactatcaatgagacatcttaca
agaacagtgtacacatctccaatcaaagctttgtccaaccagaagttccgagatttcaag
aatacttttggtgatgttggtctcctgactggagatgttcagatcaaacctgaagcttca
tgccttgtcatgacaactgaaatattacgatctatgctgtataacggttctgatgttata
agagacctggaatgggttgtatttgatgaggtccattacatcaatgattcagagagagga
gtggtttgggaggaagttctaatcatgctaccagatcatgttaacatcatcttattgagt
gctactgtaccaaacactatggaattcgcagactgggttgggagaatcaagcgaaaacac
atctacgttatcagtacattgaagagacctgtcccgctggagcatttcctctatacagga
aacagtaataagacaagtaatgaactatttcttcttgtggatgctaagaaaaacttccta
cagcaagggtacaagcaggctgtccaagccaagaaagacagagcaacaaagagcagcact
ggttttggtgccaaaggaaccagagagggtcatttcaagagtgacaaaaatgtctacatg
tcagtggtggagatgcttcgaaagaaagagcagctacccatcgtatgcttcacattctca
aagaaacgttgcaatgataactcaactcagctgtccaaccttgacctgacgacaaactcg
gagaaaagtgagatcaccgtgtttatcaagaagtctgttgatcggctcaaaggatctgat
aagaagcttccacaggttgttcttctaactgagctgttgaaacgtggcattgcagtacat
cactctggaatcctacccattctcaaagaggtcgttgaaatgctgttccaaagaggatta
gtcaagctactcttcgccacagaaacctttgccatgggagtcaacatgccagccaggacc
gtcctctttgattctatcaagaaacatgatggtactaacctacgtcatctacatcctggg
gaatacatccagatggctggtagggcggggcgtagaggtttagataccaccggtatggtt
atcatcctgtgtaaaggagatgtacccgaaacatccgatcttcactacatgatgaagggt
cgtccaacgaagctagaatcccagttccggctgacctaccccatgattctcaacctacta
cgggttgaagagcttcgagttgaagacatgatgaagaggagtttctcagagttttcaacc
agaaaggatgcagataaacacaggaagcacatcaaagacctacaacagaaagtcaaacag
attcgtgacatagattgctacatgtgctctgatttggaatcctactactgtacttgtaaa
gagcttcatcaactcagagaagaaactcagaaagttgtcctgtcccacccgtctggcgtg
aagtctctggtaccaggtcgcatcatcatcatcaggaacaaacgttaccagaagaacacc
cttggagttgttctgagctcttcgggaacatcaaaggaccggaaagtcaagacactcatt
ctctgcaatccttcggacaatgacgaatccattaccaatgaaacagaagttcacatgtcg
ccgatattgaagcactcgttttggaggcctgagggggagccaagtcatacagttaaagac
ttattagcagatgatatactgggcatcactacagtcaaaataaagctagatgcaaacaag
attgtggagaattttaacaagaggcagattccaagattcaggaatgatcccccagggcag
tcagccgtcttagccacccaggaacttctacgactgattgagacaaatccagatggtctg
gatacgcttgacccggtcagggatctgaatataagggacattgatcttgtcgacaagttt
accaccagagacttagtagagaaaactgtggataaatttaattgtacgctttgcttcaac
ttccagcagcactatgctgacatgtgctataggatgaaagtgcaggaagacctaaagcac
taccgatatcttctatcagatagaagtcttctactccttcctgaataccatcagagaata
caggtcttgaaagaactgaatcacattgacaagtctaaaaccatccaacttaaaggccga
gtagcctgtgaaattagcaaccatgaactactcatcactgagcttgtctttcaaaacatc
ctttcgctgtacccaccagatgagattgctgcattgctgtcttgtatggtctttcaggag
aggaggtgcagcgaaccagagctgacagagagtctggaaaatggtgtgaagaggatcaag
gaagaagctcttaggataggggtgttgcaacatagctgtggagtacagatgcctgcagaa
gattttgttgaacagtatcgctttggactcaccgaggtggtctatcagtgggctaaaggc
ttggaattttcagagattactagcctgacagatgtaactgaagggatcattgttaggact
atccagaggttagatgaagtctgtcgtgatgtgaggaatgctgcaagaatcgttggtgat
cctatcctcttcagtaagatggaggaagcgtctcaacttattaagagagacattgtcttt
actgcaagtttgtatacacaatga
DBGET
integrated database retrieval system
