Lytechinus variegatus (green sea urchin): 121428570
Help
Entry
121428570 CDS
T11173
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
lvg03015
mRNA surveillance pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121428570
09122 Translation
03013 Nucleocytoplasmic transport
121428570
03015 mRNA surveillance pathway
121428570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121428570
03041 Spliceosome [BR:
lvg03041
]
121428570
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121428570
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121428570
Spliceosome [BR:
lvg03041
]
Complex C
Other components
EJC/TREX
121428570
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121428570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121428570
NCBI-ProteinID:
XP_041481216
LinkDB
All DBs
Position
15:32523132..32536114
Genome browser
AA seq
427 aa
AA seq
DB search
MADENDQELLDYEDEEAQETADAGGDAVKQQKETKAKGYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLDPVDGQVSVLVMC
HTRELAFQIAKEYERFSKYMPTVKVGVFFGGVSIKKDEQTIKTNCPHIVVGTPGRTLALG
RQKILNLKHVKHFILDECDKMLEELDMRRDVQEIFRMTPHEKQVMMFSATLSKEVRPVCK
KFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALCSLLVEQNFPAIGIHRSMQQDERLARYQAFKTFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEEDAKILNDVQDRFEVNIGELPEEIDM
ASYIEQA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaaaatgatcaagagcttttggattacgaagatgaggaggcacaagagact
gctgatgctggtggagatgcagtaaaacagcagaaggaaacaaaagctaagggttacgta
tcaatccacagttcaggattcagagatttcttgctgaaaccagagcttctcagagccatt
gttgattgtggttttgaacatccgtcagaagttcagcatgaatgcattccacaagcaatc
ttgggtatggatgttttgtgtcaagctaaaagtggtatgggtaaaacagccgtattcgtt
ctagctacccttcaacagttagatcctgtcgatggccaggtctctgtactggtcatgtgt
cacacgcgtgagctggctttccagattgccaaagaatatgaacggttcagtaagtacatg
ccaactgtcaaggttggtgtgttctttggaggcgttagcatcaagaaggatgagcaaacc
atcaaaacaaattgccctcacatcgtagtaggtacacccggaaggacgcttgcccttgga
cgtcagaagatcctcaatctcaaacatgtgaagcacttcatcctggacgaatgtgacaag
atgcttgaagaacttgatatgagacgagatgtccaggagattttccgcatgacaccccat
gagaagcaagtcatgatgttcagtgctaccctcagcaaagaagtgcgacctgtctgcaag
aaattcatgcaagatccaatggaggtttatgtggatgatgaaaccaagttgacactccat
ggtcttcaacagtactacgtcaaactcaaggacaatgagaagaacaggaagctatttgat
cttctagatgtcttagaattcaaccaggttgtcatctttgtaaagagtgtacaacgatgc
attgcactctgctctcttctggtggagcaaaacttccctgccattggtatccatagatcc
atgcaacaagacgaaaggttagcaagataccaagctttcaagaccttccagaagcgtatc
ctagtcgctactaacctctttggtcgtggaatggatattgagagagttaacattgtcttc
aattatgacatgccagaggattcagatacctacctccatagagtcgctcgagctggacgt
tttggcaccaaaggtttggctgtcacgtttgtttcagatgaggaagatgctaagatcctg
aatgatgtccaagatcgatttgaagtcaatattggtgaactaccagaagagatagatatg
gcttcatacattgaacaagcctaa
DBGET
integrated database retrieval system
