Lytechinus variegatus (green sea urchin): 121428589
Help
Entry
121428589 CDS
T11173
Name
(RefSeq) voltage-dependent calcium channel type A subunit alpha-1-like isoform X1
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121428589
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121428589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121428589
NCBI-ProteinID:
XP_041481252
LinkDB
All DBs
Position
15:26341861..26545108
Genome browser
AA seq
2565 aa
AA seq
DB search
MAALTTGATPYSDGLEVNFGGGPAREPPPPSPEVTQKKTKSPAGFIVSVLTSNRSLFIFS
EENFIRRCAKWLTEWLPFEYFILATIIANCVVLALDTHLPEDDKTPRSIALEDTEIYFLA
IFCLEAAIKVIALGFCLHEESYLRNGWNIMDFIVVVTGTVSVVEASNASQAGGGFDLRTL
RAVRVLRPLKLVSGIPSLQVVLKSIIRAMAPLLQITLLILFVIIIFAITGMEFFMGKFHR
TCFVYDPVAGVVTNELAEDEPQVCGNRQCGENQNCTTYWEGPNFGITNFDNMLFAMLTVF
QCITMEGWTDIMYNCNDSEGPRFVWIYFIPLIILGSFFMLNLVLGVLSGEFAKERERVEN
RRAFLKLRRQQQIDKELMGYLEWICKAEEVMLNDKSISEEEREAIEDRRRDAAARTEDLS
NGKPSGADLVTSYGIDNDIDPNSNSPTKEKKKKKRKKKFVRIRRAEKRLRFAIRHAVKTQ
AFYWLVIVLVFLNTICVAIEHYNQPHWLEQFLYYAEIVFLCIFIMEMVIKMYGLGPGVYF
QSAFNKFDCLVICASMFEVIWTKYKDESFGLSVLRALRLLRIFKVTRYWSSLRNLVISLL
SSMRSIVSLLFLLFLFILIFALLGMQLFGGSFNYDATQAKPSSNFDTFWIALITVFQILT
GEDWNAVMYQGIKSQGGVPNGMWASIYFVILVLFGNYTLLNVFLAIAVDNLANAQELTKL
DQEEDEENREAAARELQELQASQTPNLSRRGSPNPDHLPIEDGTNIQLNDMKDPQRMNGD
HNGDMVDEDDPNGDAKGKGFFRRTYHQLNVHGIPWPCPSCENVECPCVCTCTCSCQMRKN
VNNNAKEKGPHFLHSEADENDESFHPKPMVPYSALFIFSTTNPVRRFCHYIVTLRYFDTM
IMVVIALSSIALAAENPIDPDDMRNQVLEYFDYVFTGIFTIEMVLKIMDMGLLLHKGSYM
RDLWNILDAIVVVCALFAYAYRGASSPTPMTMTMVESSGTGGGGPQNLNTIKSLRVLRVL
RPLKTIKRVPKLKAVFDCVVNSVKNVTNIAIVYLLFMFIFAVIGVQLFKGKFFHCSDLSK
VTEEECQGRYFLYEGDQIKESADRVWAKYEFNYDNVALALLTLFTVSTGEGWPDVLKHSI
EATEEGMGPTPYNRIEMSLYYVVYFIIFPFFFLNIFVALIIITFQEQGDQDFFDGDIDKN
QKQCIEFCITAKPVDRFMPANKNSFRFKVWKLVVSSAFEYFIMALITFNTFTLMMKYNDQ
GQIYTDVLKYLNIAFTVLFTIEAILKLIAFGIRNYFKEGWNTFDFITVVGSVADVIISEV
GEGFINLSVLRLFRAARLIKLLRQGSSIRILLWTFIQSFKALPWVCLLIWMLFFIYAIIG
MQIFGNIAPIDGEQINRHNNFGQFFNSLLLLFRCATGEAWQSIMMSCLPGAPCADPDKSN
PTGIKPDDTCGSNFSYVYFVSFSFLCSFLMLNLFVAVIMDNFDYLTRDASILGAHHLDEY
VRIWGNFDPTGSGKVLYKDMYDMLKNIEPPVGFGRNCPYRIAYKRLIRMNMPVDENKMVQ
FTSTLMALIRTALDIKIGKVADRDRHDAELREAVKCFWPHLSADKLDLLVPPDSELIGEK
LTVGKIYAALLIYETWREYKAKIQRDGHARTMREVIELVYFKYLYKKYPDFDINDERYQN
TFSDEFRRFILAAQKRPSLFRRLVGAVRRGSNENLPGLAEEGGSTSAAVAIKEEKTPSPQ
LKEKDRPRPGKVATTLPRIDSSGSEGLTVEQPSKQASPKQAERYQRKGRDPDRESRHHRY
REPPDNSRTLPLDPSEDCVVPVNGDMDLGLLDLGLDLNGVDQEEFLLSQSTTMTSIYEEY
DNQSFEHDEEEEIDLGVEGMSALKEQEFEDQAIEMSDIRYRDRDERGKGGSVDRRERHSM
DKHAIQYSNNTTGGNTPYSQSDYSLARGGTGRDRERSRPRVKHSVAISSDEVPFSDRDHY
IDERRHYPDRENERREKRHSIPPGDNFEQMERPRGRPSQSMSQGGLSGRSGSYEGQGGTG
NKAIDAILKRGSDIRAQHKKDQTDHSQVTRDGQPRDGQPYDRERRTGAPRQRPRHGSLPA
PPISGSHSMPAFDDGRPPRQRHSIASSSMPDFQGRGHRHPGSGYPVGDDRRDQRRHSAEQ
SSRRRSYRHDDALIDTRPPQQDIIPEEDEGIPPDGSDVLRRTARNNRKNSGGHLGQYQKF
DNSLDDEEPPSLAPGQDVRGERDTVEGSYYNEDAVSSSKSTTNYARSTEGASSSSRHERL
DSEDSVSSSQPLLSPGRSPSPRRRAPISGRDVSPQRFPPPHSPSSRRKDRHRGPDYVEFH
DRDVYDEPSYEDPFGPDRPGSSHRRPSPGWRETRDLLQAGPSQSRASSSERMDPESSQSS
PPSRKHTGRRLPTVPGESRSGGGSGGGGGGGSGSGSVTPRQRQRPSVPRSRDHSPMRLPP
PQHGGRNSGGGSKGDVRLQMDDRPPHYDVVMRTQDPPPPDQHVDPRMPNGFRPGGVEKGR
GHGTQGHSPRRTPQGVPRGPGRKHVTDNGQGGAGGYSDTEEDEWA
NT seq
7698 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctaacaacgggggcgactccgtattcggacggactggaggtgaactttggc
gggggtccagcccgagagcctccccctccctcgcccgaagtcacgcagaagaagactaaa
tcccccgctggtttcatcgtgtctgtgcttaccagtaatcgctctctattcatcttcagt
gaagaaaacttcattcggagatgtgcaaaatggctaacagaatggcttccgttcgagtat
ttcatcttagcgacaattatagccaactgtgttgtgttagcattggatacacatctcccg
gaggatgataaaacaccgaggtcaatagcactggaagacactgaaatatactttctcgcc
atcttctgtttggaagctgcgattaaagtcatagctctagggttttgtcttcacgaagag
tcgtatttacgaaacggctggaacatcatggacttcatagttgtagtcacaggtactgta
tcagtagtagaagcgagtaatgctagccaagcagggggtggctttgatctgaggaccttg
cgagcagtcagagtgttgagacctctaaaactagtatctggtatcccaagtctccaagtt
gttttgaaatccatcatcagagctatggcccctctccttcaaatcactttactcattctc
tttgtaatcatcatctttgccatcaccggtatggagtttttcatgggaaaattccatcgc
acatgctttgtatacgatccagtagctggagtcgtgaccaatgagctagcagaggatgaa
cctcaagtgtgtggaaacaggcaatgtggggaaaatcaaaattgcacaacgtattgggaa
ggaccaaattttggaataacaaactttgacaacatgctgtttgctatgttaactgtgttc
caatgtattaccatggaaggatggacggacatcatgtataattgcaacgactcagagggt
cctcgatttgtctggatctacttcattcctctcatcattctgggttcattcttcatgctc
aatctcgttcttggagtcctcagtggagaattcgcaaaagaaagagagcgagtcgagaac
agaagagctttcttaaaactgagaagacagcagcagatagataaagaattgatgggctat
ttagaatggatatgtaaagcagaagaagtcatgctcaatgataaatctatatcagaagaa
gaacgagaagccatagaagaccggcggcgtgacgccgctgcaagaacagaggatctcagt
aatggcaaaccatcaggtgctgatttagtcactagttatggcatagataatgacatagac
cctaactctaactctcctaccaaagaaaaaaagaaaaagaagcggaagaagaagttcgta
cggatcagacgggcggagaagaggttacgcttcgccattcgtcacgctgtgaagacgcag
gctttctattggcttgttatagtccttgtattcctcaacaccatctgtgttgctatagaa
cactacaaccaaccccattggctagaacaattcttatactatgcagaaatagtgttcctt
tgtatcttcataatggaaatggtcataaaaatgtatggcctcgggcctggggtctacttc
caatcagctttcaacaaatttgactgccttgttatatgcgcgagcatgtttgaggtcatc
tggacaaaatataaagacgagtcttttggccttagtgtacttcgagccctgcgactcctt
aggatattcaaagtaacaagatactggtcctccctgcggaacctagtgatatccctgtta
agtagtatgcgttccattgttagtctcctcttcctacttttcctcttcattctcatcttc
gccctcctggggatgcagttattcggtggaagcttcaattatgacgcaacgcaggcgaaa
ccttccagcaattttgacaccttctggatagctctcataacagtatttcagatcctaaca
ggagaggattggaatgcagtgatgtaccaaggtatcaagtcccagggcggggtacctaac
ggaatgtgggcgagtatctacttcgtcattctggtgctatttggcaactacacactgttg
aatgtcttccttgccattgctgttgacaacctcgccaacgcccaggagctgaccaagctt
gaccaggaggaagatgaggagaacagggaggccgcagccagggagctccaggagctccag
gcttcacagacgcccaacctcagcaggagaggatcgccaaaccctgatcatctaccaatt
gaggatggcaccaacatacagctgaatgacatgaaagacccacagagaatgaatggagat
cacaatggagacatggtggacgaagacgatcccaatggcgacgctaagggcaaaggtttt
tttcggagaacgtaccaccagcttaacgtccacggcatcccctggccgtgcccttcctgc
gaaaatgttgagtgtccttgtgtgtgtacgtgtacctgtagctgccaaatgagaaagaac
gtcaacaacaacgccaaagaaaaaggtcctcacttccttcactctgaagctgacgagaac
gatgaatcatttcatcccaagccgatggttccatatagcgccctctttatatttagcacc
accaaccccgttcgccgtttttgtcactacatagtcacactacgctacttcgacacaatg
attatggttgttattgccctcagtagtatagccttagcagcagaaaaccccatagaccct
gacgacatgagaaaccaagttctagaatactttgactacgtctttactggtatcttcacc
attgaaatggtcctgaagatcatggacatgggcctcctcctccacaaaggctcctacatg
agagatctctggaatattcttgatgctatcgttgttgtttgtgccttatttgcttacgcc
tacaggggagcatcttcacccacgccaatgacaatgacaatggtggaaagtagtggaacg
ggtggaggaggacctcagaatctgaacaccatcaaatcattgagggtactgagggtgctg
cgaccgctaaaaaccatcaagagggttccgaaactaaaggctgtgtttgactgcgtagtg
aactcggtaaagaacgtcaccaacatcgcaatcgtctacctcctattcatgttcatcttc
gctgtcatcggcgtccaactcttcaagggaaaattcttccactgctccgacctgtcgaaa
gtcactgaggaagaatgccagggaagatatttcttgtatgaaggagaccaaataaaagaa
agtgctgaccgagtgtgggccaagtatgaattcaactatgacaatgtcgccttagctttg
ctcacactctttacggtatccaccggggagggatggcctgatgttctgaagcattcaatc
gaagccacagaggaaggaatgggccccaccccatacaacaggatcgagatgtccctatac
tacgtggtctacttcattatcttccctttcttcttcctcaacatcttcgttgccttgatc
atcatcaccttccaggagcagggcgatcaggacttcttcgacggcgacatcgataaaaac
cagaaacaatgcatagaattttgcatcacggccaagcctgtcgaccgtttcatgccagcc
aacaagaattcattccgcttcaaagtgtggaagttggtcgtttcctcggcctttgagtat
ttcatcatggctctcattacattcaacacattcacgttaatgatgaagtacaatgatcaa
ggacaaatttacacagacgtcctcaagtaccttaacatagcattcacagtcctcttcacg
atagaagctatactgaaacttatagcatttggaataaggaattacttcaaggaggggtgg
aacacttttgactttatcacggtagtggggagcgtagccgatgtcatcatttcagaagtt
ggggagggtttcatcaacctgagcgtgttgagactgtttcgggcagccaggttaatcaaa
cttctaagacagggttcctcaattcgcattctactatggaccttcatacagtcattcaag
gccctaccatgggtttgtctgctgatatggatgctgttctttatctatgcaatcattgga
atgcagatatttggtaacatagcaccaatagacggggagcaaattaatcgccacaacaac
tttggccaattcttcaattcgttactgttgctgttcagatgtgctacaggtgaagcatgg
cagtccatcatgatgagctgtttaccaggagcaccttgcgctgatccggacaagagcaac
cctacggggatcaaaccggacgatacctgcggctcaaacttctcatacgtctactttgtg
agcttcagctttctctgctctttccttatgttaaatttgtttgttgctgtcatcatggat
aactttgattacctgacgagagatgcatctatcttaggagctcatcatttagatgagtat
gtcaggatctggggtaactttgacccaacaggaagtgggaaagtcttgtacaaagatatg
tatgacatgttgaagaacattgaacctccggtgggttttggtagaaactgcccttataga
attgcttataagaggttaatccggatgaatatgcctgtagatgagaataaaatggtacaa
tttacatcaacgttaatggctctgattagaacagccttagatatcaagattggaaaagtg
gctgatcgagatcgtcatgacgctgagttgagggaggcagtcaagtgtttctggcctcac
ctctccgctgacaagctggaccttcttgtacctccagacagcgaattgattggggagaag
ctaacagtggggaagatctatgcagcattactgatctatgagacttggagagaatacaag
gccaagatacaaagagatggacatgcaagaacgatgcgtgaagttatagaattggtctac
ttcaagtatctctacaagaaatacccagacttcgacatcaacgacgagcgctaccagaac
accttttccgacgagtttcgtcgattcatactggcagcccagaagcgcccctcactcttc
cgccgtctggtaggagcggtgcgccgcggcagcaatgagaacttgcctggactcgctgaa
gaaggtgggagcaccagtgccgccgtggctatcaaggaagaaaagacgccctcgccgcaa
ctcaaggagaaagatcgaccacgcccagggaaggtggcaactaccctccctaggatcgat
agttccgggtcagagggactcaccgtagaacaacctagcaaacaagcctcacccaagcaa
gccgagcgataccagaggaaaggtcgcgaccctgatcgagagagtcgtcaccaccgctac
agggagccgcctgataactcgaggaccctccctttggacccatctgaagactgtgtggtc
ccagttaatggggacatggacctaggcctgttagacttgggtctggacctgaatggggta
gaccaagaagagttcttgttgtcccagtcgacgaccatgaccagtatttatgaggaatat
gacaatcagtcattcgagcacgacgaggaagaggagatcgatctgggcgtcgaggggatg
tccgctctgaaagagcaagagtttgaagatcaggcaattgaaatgtcagacatccggtat
cgagatcgcgatgagagggggaaaggaggttcggtggatcgcagggaaaggcattcgatg
gacaagcatgccatacagtattcaaacaacacgacaggtggcaatacaccgtactctcaa
tccgattacagcctggccaggggagggactgggagggatcgcgagaggtctagaccccgg
gttaagcattccgttgctatcagtagcgatgaagtgcctttctcagaccgggatcactac
atcgacgaaagaagacattaccctgaccgtgagaatgaaaggagagaaaagcgacactcc
atacctcctggggacaattttgaacaaatggaacgtcctcgtggcagaccctctcagtca
atgagccaaggcgggctcagtggccgctcgggtagttacgaaggacagggaggcactggg
aataaagctatagatgccattctaaaaaggggtagtgatatccgggcacaacataagaag
gatcaaacagatcacagtcaagtgactagagatggccaacctcgagatggccaaccctat
gatagagagaggagaacgggtgctcccagacaacggccacggcatggttccctgccagca
cctcctatttctggttcccatagtatgcctgcctttgatgatgggcgcccacctagacaa
cgccattctattgcttcatctagtatgcctgacttccaaggtagaggccatcggcatcct
ggtagtggttaccctgtaggagacgacagaagagaccaacgcagacactctgcagaacag
tcttccagacgacgatcgtaccgacatgatgacgccttaatagacactagaccgccacag
caggacatcataccggaggaggatgagggtatccctcccgacggtagtgatgtcctcaga
cgcactgcgcgaaacaatagaaagaatagcggcggccatcttggtcagtaccagaagttt
gataactcccttgacgatgaggaacccccttccttagcccccggccaggacgtgagagga
gagagagatacggtggaaggtagctactataacgaggatgctgtatcctccagcaagtct
acaacaaactacgctagatctacagagggtgctagtagtagtagccgtcatgaacggcta
gattcggaggacagcgtgtcatcctcacaaccactcttgagtccagggcggtccccgtct
cctaggagaagagcacctataagcggacgggacgtttcccctcagaggtttccaccccca
cactcaccatcaagccgaaggaaagacaggcatcgtggtcctgactacgtggagttccac
gacagggacgtgtacgacgaaccttcttacgaagatccatttggaccggaccggcccggg
agcagtcaccggcgcccgtcgccgggctggagggagacgagagatttacttcaagctggg
ccttctcagtcgcgagcatcgagtagcgagcgtatggatccagagagttcccagtctagc
ccaccttcaaggaaacacaccggtcgcagattacccacagttccaggagagagccgcagt
ggtggcggcagtggtggtggtggtggtggtgggagtggtagtggtagtgttacacccagg
cagaggcaacgtcctagtgtacctcgtagcagagatcatagtccaatgaggctaccgcca
ccacagcatggtggacgcaacagcggcgggggaagcaaaggggatgtcagactccaaatg
gacgataggcctccgcattatgatgtcgtgatgcgaactcaagacccgccccctcctgac
caacacgtagatccccgtatgcccaatggcttcagaccagggggtgtggaaaaggggcgg
ggtcatggaacacagggacatagcccccgtaggacaccacagggtgtacctagaggacct
ggacgtaagcatgtaactgataatggacagggtggcgccggtgggtattccgatacggag
gaggatgagtgggcgtga
DBGET
integrated database retrieval system
