Lytechinus variegatus (green sea urchin): 121428795
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Entry
121428795 CDS
T11173
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121428795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121428795
Spliceosome [BR:
lvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121428795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
PRP4
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_Vps41
NBCH_WD40
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD40_like
eIF2A
WD_LRWD1
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
121428795
NCBI-ProteinID:
XP_041481564
LinkDB
All DBs
Position
15:11349473..11368113
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AA seq
502 aa
AA seq
DB search
MSEEDGGPALKKPRVHYGSLEEHLKKPDASDAINIGLEAGNINLSSGETFDMEEHISERR
KELLAEFERRRKARQITVSTDDSEVKAQLRKYGEPICIFGEGPAERRERLRHLLAALGEM
ADQDKQAKKASKEKAKADQAEKQTTWYHEGPASLKNARLWIAEYSLPRADRRLQEAAETM
RIPESQSNARRQELHRKARSLTAIGSQIGDQRPISYCRFSPDSRLLATASWSGLIKLWTS
PDFNLFKTLRGHNAHVGCVVFHPQATISLSPNACCMASCSADGAVKLWNFESEEPIANIE
GHEARVSRIEYHPSGRFLGTACFDSSWRLWDLEVQEEILHQEGHSKAVYSIDFQKDGAVC
ATGGMDAFGRLWDLRTGRCIMFLEGHLKSVLAVNFSPNCYQLATGSEDNTAKIWDMRQRK
VLYTIPAHQNIITGLKFQGTSGDYLITCSYDGTAKVWAHPGWSPLNTLAGHDGKVMCVDL
SPNEKYIATSSFDRTFKLWAPE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggaggatggaggacctgccttgaagaaaccaagggtccactatggttccctg
gaggagcatctcaagaaacctgatgcctctgatgctatcaacataggtcttgaggctggc
aatattaacctctccagtggtgaaacatttgatatggaagaacacatcagtgaaagaaga
aaagaattattggcagaatttgaaagaaggagaaaggcaagacaaatcacagtttcaaca
gatgattctgaagtaaaggcacagctgaggaaatatggagaacctatttgtatatttggg
gaaggcccggccgagagacgagagaggcttcgacatctccttgctgctctaggggagatg
gccgaccaagacaaacaggccaagaaagccagcaaagagaaggccaaagctgatcaagcg
gaaaagcaaactacgtggtatcacgagggtcctgcgagtttgaaaaatgccagattgtgg
attgctgagtattctttaccaagagctgataggaggttacaggaagcagcagaaaccatg
aggattccggaatcccagtcaaatgcaaggagacaagaattacacagaaaagcaagaagt
ctaacagcaataggtagtcagattggagaccaaaggcctatttcttattgtcggttcagc
cctgattcaagattgctcgccacagcttcatggagtggtctgatcaagctgtggacatca
ccggacttcaatctgttcaagacactgagaggccacaatgcccatgtgggctgtgtggtg
ttccaccctcaagctaccatctcgctctcccccaatgcctgctgcatggcttcttgctcg
gcagacggcgcggtcaagctctggaactttgaaagtgaggaacctattgcaaacatagaa
ggtcatgaagcaagggtgagcagaatagagtaccacccttcaggaagattccttggtaca
gcttgctttgactcctcctggagactgtgggatcttgaggtacaggaggagatcctccac
caggagggccacagtaaagcagtctactccatcgactttcagaaggatggtgctgtatgt
gcaacgggtggaatggatgcctttggtaggttatgggacctgaggacaggacgatgtatc
atgttcttggagggtcatctcaagtcagtactagcggtcaacttctcaccaaactgctat
cagcttgctactggtagtgaggataacacagctaagatatgggacatgagacagaggaaa
gtactctacaccattccagctcatcaaaatatcataacaggactcaaattccaaggaact
tctggggattatcttatcacctgttcatatgatggcacagcaaaggtttgggcccatcca
ggatggtcgcctctcaacactctggcagggcatgatgggaaggtcatgtgcgttgacctg
tcacctaatgagaaatacattgctacatcgtcatttgacaggacattcaagttatgggct
cctgagtga
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