KEGG   Lytechinus variegatus (green sea urchin): 121429543
Entry
121429543         CDS       T11173                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
lvg  Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lvg04121]
    121429543
   03400 DNA repair and recombination proteins [BR:lvg03400]
    121429543
Enzymes [BR:lvg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121429543
Ubiquitin system [BR:lvg04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121429543
DNA repair and recombination proteins [BR:lvg03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    121429543
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C DEAD zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4 zf-RING_2 zf-RING_5 SWI2_SNF2 RING_XB3-XBAT31 zf-C3HC4_4 AAA_34 zf-rbx1 Prok-RING_4 zf-ANAPC11 HDA2-3 DUF7298 Spectrin_SESTD1
Other DBs
NCBI-GeneID: 121429543
NCBI-ProteinID: XP_041482548
LinkDB
Position
16:16731741..16767331
AA seq 1174 aa
MPRRWNRWHKPSSWYSEPWGRGSQSQNSKKKSQSKKKRNYGNRYSLTEALSLTMDYLSQS
TWDDGIDDNELLGLDIPIATTQAGTNDVFLGQVLGHIVGLQYYSGTVNTNEMVSLVREPT
NRYDKNAVKVENIWGQQVGHIKRELAEVLSYIVDNNYARIEGVVPRGANNMYKMPVDISL
YGPQINQTVVQQRLRSRGYNIGMIEKRAGLSNAPSQTKSKKSSTYNPRSALGKSVTLSEA
EMKNEVDTLFDNLKSQDKTTEQEPSKWIVSTMYPHQKQALHWMLARESDDKLPTFWDKTA
SGLYHNSLTNFTSAKRPDSVRGGILADEMGLGKTLSVISLVMHEFVMPEFADLPPECVGL
PPSLPSLPEAEEMDCNKPSTSQVTQQNMIDEVIVIKDSQDIPVNSEEVIVIEDTCSPSPN
SKDIIVIKDEAPVVTSSSNTAAVTATGRPKRASAANVKFVFSDDSDDNPSPVKKAKRKQS
KSVTVPKVKGQSATKGKGKGKKTPAGDASKTLSTIQEGVPLPGLGVTVNTVPGPSIATGP
GPSKPITSHTVDSRSINSVPGPSPSNASGSGPSKPATSHAGTSPSINSGSGPRKPVPSSS
SPGPSNVAVPGPSKPTGVGVKGHVGNGDAKGPRTTLIVCPLSVLSNWIDQFSEHVSDEAQ
VNVCLYYGAEKKKLKADYLKQQDVVITTYNTMAAEYKAKKEKSTLQKVEWLRIVLDEAHT
IRNHGTLQTQAAHALTSKCRWALTGTPIQNSIKDLWSLIAFLGLEPFKSNHTWWQRIIGR
PIANNDSAGIDRVRKLMNTLALRRMKSQKLNGKPLVDLPARNVVLQYVDFSDDEKEVYKT
MEKDGRLAVSKYFQQGTVLDHYGDILAILMRLRQLCCHPALCAKAAANLCHATDVSEKTD
EEKAQLVATLVSFLSQGADEECCICLESIQDPVITRCAHVFCQRCIGEVIISEKERARCP
LCRHPVSRESLVHVPKDRSDTGNEDTEGEWHSSAKVDALMECLLTQRAADKTTKSVVVSQ
FTSFLDLLKKPLSEKGFKFTRLDGSMSRVARTEAIREFSSDDPDSPQVFLLSLKAGGVGL
NLTAASRLYLLDPAWNPACEEQCFDRCHRLGQTKDVTITKFLVRNSVEEAMLQLQEKKRQ
LMKSVFDGKKQTPEERRQNRVRDIKILMGMNSQQ
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgccacgaaggtggaaccgttggcacaaacccagttcctggtactcagaaccatggggg
aggggctctcagtcccagaacagcaagaaaaaatcacagtccaagaagaagcggaactat
ggcaaccgttattccttgaccgaagctctctccttaaccatggattatttgagccagtca
acatgggatgatgggatagatgacaatgagctcctagggttggatattcccatagcaacg
acccaagctggaaccaacgatgtattccttggtcaggtcctgggccacatcgttggtctg
caatactattctggcacggtaaatacaaatgagatggtgtcccttgttcgagagcctact
aacaggtacgataagaatgccgtgaaagtggagaacatatgggggcagcaagttggtcac
atcaagagagagctggctgaagtattgtcgtacatcgtagacaataactatgcacggatt
gaaggagtggtaccaagaggcgccaacaacatgtacaaaatgcctgtcgatatttctcta
tatggtccacaaataaaccaaactgtagtccagcagaggctgaggagccgaggatacaac
atcggaatgatagagaaaagagcaggactatcaaatgccccatcacagaccaagagcaag
aagtcttccacatacaatcccagaagcgcccttgggaagtcggtgacgctgtcagaggca
gagatgaagaatgaagtggataccttgttcgacaatctcaaatctcaggacaaaactact
gagcaagaacccagtaagtggattgtaagtacgatgtaccctcaccagaagcaggccctc
cactggatgttagccagagagagcgacgacaagttgcctacgttctgggacaagacagcg
tccggtctctaccacaactccctgacaaacttcaccagcgccaagcgaccagacagcgtg
cgtggtgggatcctggcagacgagatggggttggggaagactctctccgtcatatcgctt
gtcatgcatgaattcgtgatgccagagttcgcggacctcccaccggagtgtgttggtctt
cctccatctttgccgagcttgcccgaagcagaggagatggattgcaacaagccttcgaca
agtcaggttacgcagcagaatatgatagatgaagtaatagtgatcaaggattcccaggat
atacctgtcaattcagaggaggtgatagtaattgaggatacatgtagtccaagtcccaat
agtaaagatattattgtcattaaagatgaagcgcctgttgtcacaagttcctcaaacact
gcagcagtcacagccaccggtagacccaagagggcaagtgctgctaatgtaaagtttgtc
ttcagtgatgattcagatgataacccatcacctgtaaagaaagctaaaaggaagcagtca
aaatcagtcacagttcccaaagtaaagggtcagagtgctacgaagggcaaaggaaagggc
aagaagacacctgcaggtgatgcatcaaagacattatccactatccaagaaggggtccct
ctaccaggactcggcgtaacagtcaacacagtaccaggtccatcaattgccacaggacct
ggccctagtaaaccaatcacctctcacactgtagatagccgatcaatcaactcagtgccg
ggtcctagtccatcaaatgcctcaggatctggccctagtaagccagccacctctcatgct
ggaactagcccatcaatcaactcaggatctggccctcgtaaaccagtaccatcgagctct
tcgcctggtccatcaaatgttgcagtacctggaccaagtaaaccgactggagttggggtc
aaaggtcacgttggaaatggagatgctaagggtccccgtactactctcatagtttgccca
ctgtctgtactttcaaactggattgatcaattcagtgaacatgtttctgatgaggcccag
gtgaatgtgtgtctgtactatggagcagaaaagaagaaactgaaggccgattatctcaag
caacaagatgttgtcatcactacctataatactatggctgctgagtacaaggccaagaag
gagaaatctaccctgcagaaggttgagtggcttcggatagttctggatgaagcccatacc
atcaggaatcatggcaccctccagacacaggctgcacacgccctcacttccaaatgtaga
tgggctctcacaggtacgcctatacagaacagtattaaagatctttggtcgttgattgca
ttccttgggttggaaccctttaaatcaaaccatacttggtggcagaggatcatcgggaga
ccgattgctaacaatgattctgctggcatagatcgggtgcgtaagttgatgaacaccctc
gccctgcgtcggatgaaatcccagaagttaaacggtaaacctctggtggatctaccggct
cggaatgtcgtcctccagtatgtggacttctccgatgatgagaaagaggtctacaagacc
atggagaaagatggcagactggccgtcagcaaatatttccagcaaggcactgtcctagat
cactatggtgatattctagcaatcctcatgagattgagacaactctgttgtcatcctgct
ctctgtgctaaggctgctgctaacctatgccacgctactgatgttagtgagaagacggat
gaagaaaaggctcagctggtagcaaccttggtctcgttccttagtcaaggagctgatgag
gagtgttgcatctgcctagagtccatccaagatcctgtcattacaagatgtgcccatgtc
ttctgtcagaggtgtattggagaggtcatcatctcagaaaaggaacgtgcgcgctgccct
ctttgtcgtcacccggtaagccgagagtcccttgtccatgtgccaaaggatagatcagat
actggaaatgaagatacagaaggagagtggcattcaagtgcaaaggtggatgcattgatg
gagtgtttgctgacacagagggcagcagacaagacaacaaagagtgttgttgtttctcag
ttcacctcattccttgacttgctgaagaaacccctcagtgagaagggtttcaagttcacc
cgtcttgatggctccatgtcacgcgttgctcgtaccgaggctataagagagttcagcagt
gatgatccagactcaccacaagtcttcctcttatcactcaaggctggaggggtcggtctg
aacctgacggcagcttccaggctatatctccttgaccctgcatggaacccggcatgtgaa
gagcagtgctttgacagatgccatcggctgggacaaaccaaagatgtcaccattactaaa
ttcctggtgcgtaacagcgttgaggaagccatgcttcagcttcaagagaagaagaggcag
ctgatgaagagcgtctttgacggcaagaagcaaacacctgaagaaagacgacagaaccgg
gtcagggatatcaagatcctcatgggaatgaatagccagcagtag

DBGET integrated database retrieval system