Lytechinus variegatus (green sea urchin): 121429977
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Entry
121429977 CDS
T11173
Name
(RefSeq) replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03030
DNA replication
lvg03410
Base excision repair
lvg03420
Nucleotide excision repair
lvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121429977
03410 Base excision repair
121429977
03420 Nucleotide excision repair
121429977
03430 Mismatch repair
121429977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvg03032
]
121429977
03036 Chromosome and associated proteins [BR:
lvg03036
]
121429977
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121429977
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121429977
DNA Replication Termination Factors
ELG1-RFC complex
121429977
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121429977
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121429977
Check point factors
HRAD17(Rad24)-RFC complex
121429977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_22
AAA_lid_RFC1
AAA_assoc_2
AAA_30
AAA_24
DNAX_ATPase_lid
SLFN-g3_helicase
AAA_16
AAA_11
AAA_19
RuvB_N
ATPase_2
MCM
DUF815
Histone_HNS_N
SNARE
Kinesin
Motif
Other DBs
NCBI-GeneID:
121429977
NCBI-ProteinID:
XP_041483180
LinkDB
All DBs
Position
16:complement(18035818..18056282)
Genome browser
AA seq
390 aa
AA seq
DB search
MLVRRRDFPREFYNTSARTSKLSIINLGLQLLTEMDAFLKGGSFKSKAATTSTGGSTKQR
QVPWVEKYRPKTVDEVAYQDEVVAVLKKSLQGADLPNMLLPYGPPGTGKTSTILAASREL
FGHDMYRSRVLELNASDERGIQVVRDKVKKFAQTAAGGVRPDGKPCPPFKIIILDEADSM
TNDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLREIC
QAENITCSDEALEAILKLSEGDMRKSITFLQSVHRLQREDGILVDDIYEIAGVIPDRIID
NLIQACYGGSYEKLDEKVQQLLQDGYSASQVVNQVFDVIVERGELTDKQKSAIAERLAVI
DKRLCDGADEGLQIMDLFTLTMDQFCTVQN
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgttggtacgccgtagagattttccccgggaattttacaataccagcgcgcggacctcg
aagttgagtatcattaatttaggcctacaacttcttacagaaatggatgcttttcttaaa
ggagggagctttaaatccaaggctgcaactacttccactggagggtccaccaaacaaaga
caagtgccatgggttgaaaaatatcggccgaagacagttgatgaagtggcttatcaagat
gaggttgttgctgttcttaaaaaatccttacaaggagcagatctacctaacatgttgttg
ccctatgggcctcctggtacaggcaaaacatccaccatcctagctgcatcaagagagctc
tttggacatgacatgtatcgaagccgtgttctagaactgaatgcctcagatgagcgagga
atccaggtggtacgagacaaggtcaagaaatttgctcagaccgctgcaggtggagtcaga
ccagatgggaaaccatgccctcctttcaagatcatcatattagatgaagctgattcaatg
accaatgacgctcaggctgcccttaggagaacaatggagaagcaatccaagaatacaaag
ttttgtctcatctgtaattatatcagcaggattatagagccgctgacgtctcgttgctcc
aagtttcggtttaagcctctcagtaaacccatacaggggaagaaactgagggaaatttgt
caagctgagaacatcacatgcagtgacgaggctctggaagccattttgaaattatcggaa
ggagacatgaggaaatccatcaccttccttcagagcgttcatcgtcttcaacgagaggat
ggcatcctggttgatgatatctatgagatcgctggggttataccagataggatcatagat
aatctcattcaggcctgctatggtggatcctatgagaagctggatgagaaggtccaacag
ctgctccaagatggctactcagcatctcaggttgtcaaccaggtatttgatgtcatagtg
gaaagaggagagctgactgataaacagaagtcggccatcgctgagcggcttgccgtcatc
gacaagcgactgtgcgatggagcagacgaaggcttgcaaatcatggatctgttcacactg
accatggatcaattctgcactgtgcagaactag
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