Lytechinus variegatus (green sea urchin): 121430016
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Entry
121430016 CDS
T11173
Name
(RefSeq) ATP-dependent RNA helicase DDX3Y-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121430016
03041 Spliceosome [BR:
lvg03041
]
121430016
03036 Chromosome and associated proteins [BR:
lvg03036
]
121430016
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121430016
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121430016
mRNA cycle factors
Common to processing body (P body) and stress granule
121430016
Spliceosome [BR:
lvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121430016
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121430016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121430016
NCBI-ProteinID:
XP_041483219
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All DBs
Position
16:4474522..4506423
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AA seq
794 aa
AA seq
DB search
MSANWQPRSFHICATSSPNLPQISQKKSVVMSNGTNQNGPTLDQQFAAMDLMTGAKKYVP
PHLRNRNDGGRPMAVPHPGGYQNFIAPNAQPGFGGAQFTRAMGYPAQPPPPFNAPPPQAQ
GYSGGYDGGSSGNYGRSGYNNQGRGGGYNNRGGYNREGGRGGYNRDQGNSYNGRGGGGGG
RYNDQQSGSYQNRNSYQDSGGRGGYQSPQGQGGPGGYQPRGNYNSRLDWGPGGRGAPQQG
GGDTFWGVRGQQNQDGWGRAEDYRGRDVPRVEQDEDWTKPLPRNTRVENELFGSSNTGIN
FDKYADIPVEATGTNSPSPIEQFSDIDLGDIIRNNTELCNYNTPTPVQKYAIPIIKGKRD
LMACAQTGSGKTAAFLLPILSQIFESGPHKHAVGCYRKKQFPLALILSPTRELTSQIYDE
ARKFSYRSHVRPCVVYGGADVKGQIADLERGCHLLVATPGRLVDMLERGKIGLEKIRWVV
LDEADRMLDMGFEPQIRRIVEEDEMPKVGERQMLMFSATFPKEIQVLARDFLKDYIFLAV
GRVGSTSSNITQKIVWVEEGDKRSFLLDLISASGAGSLTLVFVETKKGADALEDFLLREK
FQATSIHGDRSQKEREEALKTFRSGRTPILVATAVAARGLDICNVKHVINFDLPTDIEEY
VHRIGRTGRVGNTGLATSFFNEKNRNIARDLADLMIEAKQEVPNWLDALASEAKNSGGSS
RRGRNRYPGGFGSRDYRQANNRGGRGGGVSGGYGGHQTGGGHGGGNFPVYQPHYGGNYGG
SYNQSSGGQDWWGN
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcaaattggcagcctcgcagtttccacatttgtgctacgtcaagtcccaatttg
cctcaaataagtcagaaaaaatcagtagttatgagtaatggaacgaatcaaaatggacct
accctggaccaacagtttgctgctatggatctgatgacaggagcaaaaaaatatgtgcca
ccacacctacgcaacagaaacgatggtggacgtcctatggcagttccacacccaggcggc
taccagaacttcattgcccccaacgctcaaccaggttttggtggcgctcaattcactaga
gccatgggctatccagctcaaccacctcctccattcaatgcacctccaccccaagcccag
ggctacagcggtggatatgatggtggttccagtggaaactacggccgcagtggatacaac
aaccaaggaagaggaggcggttacaacaaccgtggtggctacaacagagagggcggccgt
ggtggatacaaccgtgaccaaggcaacagctacaacggacgaggaggtggtggtggtgga
cgttacaatgatcagcaatcgggatcatatcagaacaggaatagttaccaagattcaggt
ggacggggtggctaccagagcccacaaggacagggaggacccggaggataccaacctcgt
ggtaattacaacagccgtcttgactggggacctggtggtcggggagccccacagcagggt
ggcggtgataccttctggggtgtccggggccaacagaaccaggatggctggggtagggcc
gaggactaccgaggtcgtgatgtgccacgtgtagagcaagacgaggattggactaagcct
ctcccaagaaacacccgtgtagaaaatgaattgtttggaagttccaacactggaattaac
tttgacaaatatgctgacatccctgtagaggctacaggaaccaactcaccatctcccatt
gaacagttcagcgacattgacttgggtgacatcatccgtaacaacactgagctgtgtaac
tacaacaccccaacccctgttcagaagtatgctattcctatcatcaagggaaagagagat
ctcatggcctgtgctcagactggttctggaaagactgctgctttcttgcttcctattcta
tcccaaatctttgagagtggacctcacaaacatgctgtgggttgctaccgtaagaagcag
ttccctcttgctttgattctatccccaactcgtgagttgacatcccagatctacgatgaa
gctaggaagttctcctaccgttctcacgttcgtccctgtgtggtttatggaggagctgat
gtcaaaggtcagattgctgatttggagaggggttgccatctccttgttgctacgccagga
cgtctggtcgacatgttggagaggggcaagatcggtcttgagaaaatcagatgggtggtc
cttgatgaggctgatcgtatgcttgacatgggttttgaaccccagattcgccgcatcgta
gaggaagatgaaatgcccaaagttggagagagacaaatgcttatgttcagtgccaccttc
cccaaggaaattcaggttctggcccgtgacttcttgaaagactacatcttcttggctgtt
ggtcgcgttggtagtactagcagcaacatcacccagaagattgtctgggtggaggaagga
gacaagagatccttccttttggatttgatctcggcctcaggtgctggctctctaaccctg
gtgtttgttgagaccaagaagggagctgatgctctagaggatttcctcctccgggagaag
ttccaagccaccagcatccatggtgatcgctcccagaaggaacgtgaagaagccctgaag
accttccgtagtggccgcactccaattctggtcgctaccgctgtggccgcccgtggtctt
gatatctgcaacgtgaagcacgtcatcaactttgatctgccaacagacattgaggagtac
gttcaccgtattggtcgtactggacgtgtcggcaacacaggtcttgcaacgtctttcttc
aatgagaagaaccgtaacatcgcccgtgacttggctgatctgatgattgaagctaagcag
gaagtacccaactggcttgatgctctcgctagcgaggccaagaacagtggaggctcatca
cgacgtggacgcaacaggtaccctggagggtttggttcccgtgactaccgtcaggccaat
aaccgtggtggacgtgggggcggagtctccggcggctatggaggtcaccagaccggcgga
ggacacggtgggggcaacttccccgtctaccagcctcattacggcggaaactatggaggt
agctacaaccagtccagcggtggtcaggactggtggggcaactag
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