KEGG   Lytechinus variegatus (green sea urchin): 121430490
Entry
121430490         CDS       T11173                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 1-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lvg  Lytechinus variegatus (green sea urchin)
Pathway
lvg03082  ATP-dependent chromatin remodeling
lvg03083  Polycomb repressive complex
lvg04330  Notch signaling pathway
lvg04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121430490
   03083 Polycomb repressive complex
    121430490
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    121430490
   04350 TGF-beta signaling pathway
    121430490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lvg03036]
    121430490
Enzymes [BR:lvg01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     121430490
Chromosome and associated proteins [BR:lvg03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     121430490
   HDAC complexes
    Sin3A-HDAC complex
     121430490
    BRAF-HDAC complex
     121430490
    REST complex
     121430490
    SHIP complex
     121430490
    MiDAC complex
     121430490
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     121430490
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121430490
  Chromatin remodeling factors
   NuRD complex
    121430490
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 121430490
NCBI-ProteinID: XP_041483701
LinkDB
Position
17:417631..437834
AA seq 557 aa
MASTGTKKRVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAVM
EEMTKYHSDDYVKFLRTIRPDNMSEYTKQMQRFNVGEDCPVFDGLYEFCQLSSGGSVAGA
VKLNKQQTDIAINWAXGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGD
GVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYDKIF
KPIMSKVMEMYQPSAICLQCGADSLSGDRLGCFNLTLKGHAKCVEFMKQYNLPLLLMGGG
GYTIRNVARCWTYETSTALGVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTGEYLDK
IKTRLYENMRMIPHAPGVQMQPIPEDAIPDDSDAEDEAENPDKRISIMAQDKRISRDDEF
SDSEDEGEGGRRDHRSHKAKRSKTEDGTGKEADKESKSSDTTKELKPADQQAIPMDTTPA
PQAKKSDDKPESSKPSEGKAKPPEKDQGEASPADPSVPAPKVTAPTEGTTPAVGNLSSGP
AQPATAPTATPATEKQD
NT seq 1674 nt   +upstreamnt  +downstreamnt
atggcgtctacgggtacaaagaaaagggtctgctattattatgatggtgatgttggcaac
tattactatggacaaggacatcccatgaaaccgcatagaatacgcatgacacataatctc
atactcaactatggactctacagaaagatggaaatctacagaccacacaaagctgtgatg
gaggagatgacaaaataccacagtgatgactatgtcaaattcttgagaaccattcgacct
gataacatgtcagaatacactaaacagatgcaaagattcaatgtaggtgaagattgtcct
gtatttgatggtctctatgagttctgtcagctctcatccggtggttcagtagcgggtgct
gtgaagctcaacaaacaacagacagacattgcaatcaactgggccnggggtcttcatcat
gcaaaaaaatcagaagcatcaggattttgctatgttaatgacattgtattggcaatcctt
gaattactcaaataccatcagagagttttgtacatagacattgatattcaccatggtgat
ggagtagaagaagccttttatacgacagaccgtgttatgactgtgtcctttcacaagtat
ggtgaatacttccctggtaccggagaccttagggatattggagcagggaaagggaagtac
tatgcagtcaactttcctctcagagatggcatcgatgatgaatcttatgacaagattttc
aaaccaatcatgtctaaagtaatggagatgtaccaacccagtgctatatgccttcagtgt
ggagcagattcattatcaggggacaggcttggatgcttcaatctaacactcaaaggtcat
gctaagtgtgttgaattcatgaagcagtataacctacccctattactgatgggtgggggt
ggttacacgatacgaaacgttgcaagatgctggacgtatgagacctccacagccttggga
gttgagattgctaacgaattgccatacaatgattactttgaatattttggaccagacttc
aaacttcacattagcccttctaacatgaccaatcagaacacaggagaataccttgataaa
atcaagactcgcctatatgagaacatgcgtatgatcccccatgcaccgggtgttcagatg
caacccattccagaggatgccatccctgatgatagcgacgctgaagacgaggcagagaac
ccagacaaacgtatctcaatcatggctcaagataaacgtatctctcgtgatgatgagttc
tctgacagtgaagatgagggtgagggcggtagacgcgatcataggtcacacaaagctaag
agatccaagacggaagatggaacaggcaaagaggctgataaagaatcaaagtcaagtgat
acaacaaaggaactaaaacctgctgatcaacaagccattccaatggatacaactcctgca
cctcaagctaagaaaagtgatgacaaaccagaatccagcaaaccttcagaaggcaaggct
aaaccacctgagaaagaccaaggtgaagcttctcctgctgatccgagtgtccctgcgccc
aaggtgaccgcccccaccgaaggaaccacccctgccgttggtaacctctcatcaggccct
gcccagcccgctacagctccgacagccacccctgcgacagagaaacaagattga

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