Lytechinus variegatus (green sea urchin): 121430680
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Entry
121430680 CDS
T11173
Name
(RefSeq) nuclear pore complex protein Nup153-like
KO
K14296
nuclear pore complex protein Nup153
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
lvg03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121430680
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121430680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121430680
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121430680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
121430680
NCBI-ProteinID:
XP_041483959
LinkDB
All DBs
Position
17:complement(27365240..27403791)
Genome browser
AA seq
1709 aa
AA seq
DB search
MATPSGGKFRPKRSHYSRKPYERPKPKSLLARVSDSVKDFITPSWLNNLWNNPNDDDGEG
SSRSSTPELPAQPDGPASGTPNFMPSAVATSTPDINLNLRTGKEALSEPGPPSMETTPIV
QFEEDVVKDGGRTVRNEDDDVVIIDEEQPSTSTGIRHTPLPFRNYANPISTSTPNDDMQL
LGGRKQAVDKDDASDTSVSTSGCSSLVPHVDRVDHKEKLSKKNLDRLSEMGHSNSLAKSS
LWTDLSSAGPSSAGAAGLSSSRPQPSIGSAKRPSFNSSYFGSPKLLGEPRPKHASPFYPG
RTQFGGSSAQRTALKRHRDSPYEVHLPVKRNIRPKPAQSSLQDGLGATSSTAKKILDTLE
RMSTPLLDAKKIPLSPTASPYSFRPSSRLSGRPGTSRVNTPPTAGLRVAHQASIKANRQP
PVSMATTVIDLEKEERVSAPSSDEVLPLSTGAPTISTAPSFRFGAPITSSTPAELPSARE
KSGGKMKSKSRGAGHYSAQKAEQEVCEIPDLPAIPLPLTKGLPSFSFGSNLYSSTSSSTS
KPSTTSSTSISAASTKDSNLVSNSKNVSSKSSISTTPAQSSTVPSFKFAAPTSTSAATSI
SEGPQFTFASPIIKQTGSSSTSSSTNSSSTATTFKFSMPRQTPYSTSRPSTSAPVGGKKP
SFETPERTRRKGEDDDDVVEIKDDEVEEQQGGIKVAKELKTGSCLEVFGIKPTQNGPIPS
SSSKVQERSAKESKTKMDNGPVTGILGQNSGASNIQNDKTLSIINKFKPPASSWECDTCL
IQNKEDASQCVACATPKPGQKATKSSTLSTPFGAKPNAIINKFKPPANSVECDTYSIQND
GDACGSLGGTTTKPGQNTSRPAASIVSDSKPPVVNSLAEKFKKKADEWDCDTCMIRNKEN
AGTCVACTTPRPGKSKGGEATKTLPKEHAVNNTIAEKFKAKPGEWECDTCMIRNKATILK
CVACETPKPGSQPTLSAPPASSFKFGSTPLSNGDATGAFKFGNSTTSDLLNSNTNASSGG
FKLPAGLSLGQSIKPAASTDLSAVTTSSSGGGFKLPTNFSLSKTLSNSSATDAKPPSAVK
SVESSLLSQTKTEQKLEVKVPTGMKFGASSSESSSASSGLKLTTGASTGGFKFGQNDAST
DSSSSIGGGFKFGQSPATAGQTLLEKDGPPPNVNIFQTNETKVDGPTAQKGFSFGAATST
SAGTTEKKTEGASTVAPAFTFGSSSSTKLTTLKPEAPAFGAGSVTFGGAKPTDSSDKPAE
SKPTFTFGSTAAPDASSSAPTSASTTPSFNFGGSSASKPDASNALKTDSKSAFMFGSATP
SQTAGLAFGAKTQEPAATSASTFTFGQTSAAAPEKTASAPSFNFGAPVAKAKEEPAKPAF
TFGSQNQNNNQGGSGFNFGTSAAPSAPQTQTTPSFNFGAGNKAPAAPSGGFSFGNAPNSN
STATGTSSASGFGGFGSNRSSTNPSPAFGAPPTASQPPSTFTFGSTATSASSNPFGGSSA
TANATPFGGQAANPTFGSANTQSQGFGATPTQGSIFGSGASATSSNNAFGSGLGASATGA
QAFGASTNVAPAFGTKPAPAFGSGTANATSGGFSFGKSTTPSFNFGATNNATPSGPTAGG
FQFTGNQSNQAPQVAPAATPQPAGGFNFAGARPQSSFNFSGNTPQPGTTAFQFNATTGSS
DNPFNASATPGNSTSTRKIKRAVRRTAKR
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccccgtctggtggtaaatttcgcccgaaacgatctcattactcgcgtaaaccg
tacgaacgtccaaaaccgaagtctcttttagctcgcgtctcggattcagtcaaggacttc
atcacaccatcctggctgaataatctctggaacaatcccaatgacgatgatggggaaggc
agctcgcgttcctcaaccccagagctgcccgcccagccagacggaccagcatcgggcacc
ccgaacttcatgccttctgcggtggcaacaagcaccccagacatcaatctcaaccttcga
actggtaaagaggctctaagcgaacccgggccacctagcatggagaccacacccatagtg
caatttgaagaggatgttgtaaaggatggcggtagaactgtcaggaatgaggacgatgat
gtggttattattgacgaggagcaacccagtaccagcacgggaatcagacatactcccctg
ccgttcaggaactatgcgaatcctataagtacgtcaacaccaaacgacgacatgcagttg
ttgggcggaaggaagcaagccgttgacaaagacgatgcttctgatacgtcagtgtcaacg
agtggctgctcttccctggtaccccacgtagacagggtcgatcataaggagaagttatcc
aagaagaacctggataggttatcagaaatggggcattccaactctcttgccaaaagcagt
ctttggacggatctgtccagtgccggcccctcttctgctggtgctgccggcctgtcatcg
tcgaggcctcagccatccataggcagtgccaagagaccgtccttcaatagctcatacttc
ggctctcccaaactgcttggggaacccaggccgaagcacgcctctccgttctatccaggg
aggacacagtttggaggatcttcggcgcagcgtactgccctcaagaggcaccgagattct
ccatatgaggtgcacttgccagtcaagaggaatatccggcccaagccagcccagtcgagc
ctgcaggatggcttgggagcgaccagctcaacagctaagaagatcctggataccttagaa
aggatgtccacaccgctcctggatgccaagaagatccctctctctccaaccgcttcacct
tactcctttaggccatcaagccgactctccggtcggcccggaacctcgcgggtgaacacc
ccacccacagccggtcttcgtgttgctcatcaggcaagcatcaaagccaacaggcaacct
cccgtttccatggctaccacggtgattgatctcgagaaagaggaaagggtatcggctcca
tcaagtgatgaggtcctaccattgagtacaggtgctccaacgataagcacagcgccatca
ttccgatttggagcacccatcacttcttcaactccagctgaactcccttcagccagggag
aagtctgggggcaaaatgaaatcgaagagcaggggtgcagggcattattcagcacagaaa
gctgagcaagaagtgtgtgagattccagatttacccgcgataccactacccctaaccaag
ggactcccatcattcagctttggttcaaacttatactcctcaacctcatcgtcgacctcc
aaaccctcgacgacgtcatctacatccatctctgctgcctctacaaaggacagtaatctt
gttagtaatagtaaaaatgtttcaagtaaaagcagcatttccacaacccccgcccaatca
tcaacagtgccatcgttcaaatttgctgctccaacgtcgacatcggcagcgacgtcgatc
tcggagggtccccagttcaccttcgcatctcccatcattaagcaaaccggcagcagttcc
acttcgtcctcaacgaatagttcttccaccgcgaccaccttcaaatttagtatgccccgt
cagaccccttactcgacatccaggccctcgaccagcgcccccgttggcggaaagaaacca
agtttcgaaacccccgaaaggaccaggaggaaaggagaagacgacgatgacgtcgtggag
atcaaagacgacgaggtggaagagcaacagggtgggatcaaggtggcaaaggaactcaag
acgggaagctgtctggaagtctttggtattaaacccactcagaatggtcccattccatca
tcaagttcaaaagtgcaagaacgttctgccaaggaatccaaaacaaagatggacaatggt
cccgtaacgggaatcctcggtcaaaactctggtgcaagcaatattcagaatgacaagaca
ctttctatcattaacaagttcaagccccctgcgtcttcatgggaatgtgatacgtgttta
atacaaaacaaggaggatgcgagccagtgtgtagcgtgtgcgacgccaaaacctggacag
aaggcgacgaaatcatcaacgttgtctacccctttcggagcgaagcccaatgcaatcata
aacaagttcaagccacctgcaaactctgtggaatgtgatacgtactcgatacaaaacgat
ggtgatgcttgtggaagtttggggggtacgacaacgaagccgggacaaaacacctcaaga
cctgcagcttcaatagtatcggactccaagcctccagtcgtcaatagcctggccgagaaa
ttcaagaagaaagcagatgaatgggactgcgatacgtgcatgatccggaataaagagaat
gctggtacgtgtgtggcatgtacgactcccaggcctggcaagtcaaaaggcggggaggcc
acaaagacgctaccaaaggaacatgcagtgaataatacaatagctgagaagttcaaagca
aagccaggggaatgggagtgtgatacatgcatgatcaggaataaagcaacgatactcaag
tgtgtggcgtgtgagactccaaagccagggagtcagccgaccttgagtgcacccccagct
tcatcattcaagtttggtagtacacctttaagcaatggagacgcaactggtgcctttaag
tttggtaattccacaacctcggacttgttaaactcaaacacgaatgccagcagcgggggt
ttcaaactccctgctggtcttagcctagggcagagtataaagcccgctgccagcacggac
ttaagcgcagtaaccacttcctcatcagggggtggctttaaattaccaacaaacttttct
ctgtccaaaacacttagcaactcatcagcaacagacgcgaagcccccgtcggctgtcaaa
agcgttgaatcgtcattgctaagtcaaacaaaaacggagcaaaaactagaagttaaagtg
cccacagggatgaaattcggagccagttcatcggagtcgagctctgcgagcagtgggtta
aaattaactactggtgcctccacaggagggttcaagttcggacagaacgatgctagcact
gatagttcgagtagtataggaggtggattcaaatttggacaaagccctgccactgcgggg
cagacgctactagaaaaagatggccctcccccaaatgtgaacattttccaaacgaacgaa
acaaaggtggatggcccgacggcacagaagggatttagtttcggtgctgcgacctccacc
agtgcgggaaccactgagaaaaagacagaaggtgcgtccacagttgcacccgctttcacc
tttggtagcagttcctcaaccaaacttacaaccttgaaacctgaggcccctgcatttggt
gctggttcagtgaccttcggtggcgccaaaccaacagactcttctgataaaccagctgag
agtaaacccacatttacctttggcagcactgcagctccggatgcaagttcctcggcacca
acaagcgcttccacaacaccaagtttcaactttggtggcagcagtgcgagcaagccggat
gcctctaacgcattgaaaacggacagtaaatcagcattcatgtttggtagtgccacccct
tcccaaacagctggtcttgcgtttggagccaagacccaagagcctgccgcaacttctgct
agtaccttcaccttcggacaaacctctgctgcagcaccagagaaaacagcttcggcgcca
tccttcaactttggagctccagtggcaaaggccaaggaggaaccagcaaaaccagcattt
acattcggaagtcagaaccagaacaataaccaaggtggatctggattcaactttggaacg
tctgctgccccctctgctccgcaaacccagacgacaccatcctttaattttggagcgggc
aacaaggctcctgcagcaccttcaggtggtttcagcttcgggaatgccccaaattcgaat
tctactgctacagggacatcatcagcaagtggatttggtggattcggtagcaacaggagt
agcaccaacccgtctcctgcatttggtgccccgcccactgcttcccagcccccatcaacc
ttcacctttggttccactgccaccagcgccagcagcaaccccttcggtggcagcagcgcc
acagccaatgccacgcccttcggtggtcaagctgccaaccccaccttcggatccgccaac
acgcaatcgcaggggttcggagccacgcccacccaggggtcgatatttggtagcggtgcc
agtgcaacaagcagcaacaatgccttcggaagtggactcggggcatcggctacgggcgct
caggcatttggtgcctccaccaatgtagcgccagcattcggcaccaagccagcaccggca
tttgggagtgggactgcaaatgccacatcaggtgggttttctttcggcaaatcgacgacg
ccctccttcaattttggtgccacgaacaacgctaccccgtcagggccgaccgccggaggt
ttccagttcaccgggaatcagtccaaccaggccccgcaagttgccccggcagccacccct
cagccagcagggggctttaactttgccggggcaaggccgcaatcgtccttcaacttcagt
ggcaacaccccacaacctggtacaactgcgtttcagttcaacgcaactactggatcgagc
gacaacccgttcaatgcttccgcaacaccagggaattctacatcgaccaggaagatcaag
agggctgtacgtcggacggccaagagatga
DBGET
integrated database retrieval system
