Lytechinus variegatus (green sea urchin): 121431613
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Entry
121431613 CDS
T11173
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121431613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121431613
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121431613
Spliceosome [BR:
lvg03041
]
Complex A
U2 snRNP components
U2 related factors
121431613
Complex B
121431613
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
121431613
NCBI-ProteinID:
XP_041485115
LinkDB
All DBs
Position
18:complement(6274749..6305024)
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AA seq
1204 aa
AA seq
DB search
MPRESRQYRKRSRSKSPEADDSSKKKRSPERSKDKDKERERRRSRSRSKSKDRSRRSRSR
ERDRRSRSKEKERRSRSRERERRSRSRERERRSRSRERERDRSRRSRSRSRERDRRRDRR
SPPRRDRDRDRDRDRDRDRDRRSRRSRSRDRTRRRRSRSRSRSPKRSKRSRSRGRRSLSA
DRASRSRSRSPNKDSKSKGSSSSGVKTETAVKVEGKVETEVKKEAEVKQEVKVKEEKKDE
SKEVKEEKGLVLEQRRLEEEMQKRRERIERWRMERKKTMEAAAGPSKTEGEEEKVDAPPQ
KPGKKWSLEDDDDADDEAEAEDESKESKPPPGSLGKDDEEKMDVDKKEDEKKTEEDDDDD
IDPLDAFMMGVQAEVKKISSKDKKPPPPVEKAVKANNNGNGTGEAPKFSIVTGVVKKKSV
PVPTPVVTTPRRKGELMENDQDAMEYSSEEEKESNLMDTMAAIEQKKKKELAKVDHSKIE
YQPFRKDFYIEVPELARLTPEEVDKRRSDLEGVRVRGKNCPKPVDSWVQCGVSKRVLTVL
KKNNYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTMAFLLPMFRHIMDQDPLEGDDGPV
SLIMTPTRELAMQIFKECKKFTKSMGLRAVCVYGGTGISEQIAELKRGAEIIVCTPGRMI
DMLGANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMKIVENIRPDRQTVLFSATFPRQM
EALARKILTKPIEVQVGGRSVVCSDVTQHALILEEDQKFLKLLELLGYYDEGQILVFVEK
QESADLLLKDLMKASYPCLALHGGIDQYDRDSIIQDFKAANVKILVATSVAARGLDVKKL
VLVVNYDCPNHYEDYVHRVGRTGRAGNKGFSYTFLTPEQAKYAGDVIKAFELSGSKVPGE
LTEMWSFYCNQQKSEGKEVIRNSGFSGKGFKFDDTERELANEKKKLQKAALGLQDSDDED
AGMDIDEKIETMFASKRRVKDVTADEMPIIQQPQANPATPQQPGVVPGGAAAVPAGANQA
MLSLAKRMAAKINKNLESERNVDMIQQATQAVMKGATLGQPSVSAFTRAEQLAGKLNAKL
NYIPKINEEEKEEEQPKPTFRKYEEELEINDFPQTARWKVTSKENLAQIQDYSEAGITIR
GTYFPPGKEPKEGEGERKLYLAIESVSERAVSKAKAEITRLVKDELVRLQNSYQPTNKGR
YKVL
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgccgagagaaagccggcaatatcgcaagaggtcaagatccaaatcccccgaagctgat
gacagctccaagaagaaacgatctccagagagatcaaaggataaggacaaggagagagaa
aggaggaggtcacgttccaggtctaagagcaaagacaggtcacggaggtcacgcagcaga
gagagagatcgtaggtctcgcagcaaagagaaggagcgtaggtcacgaagcagagagagg
gagcgtaggtcacgcagcagagagcgggagcgtagatcacgcagcagagagagagaacgt
gataggtccagaaggtcaagatccagatccagagaaagagacaggagaagagatagaaga
agtccccctcgaagagacagggatagagacagagatagagaccgcgatagggaccgagac
cggagatccaggcgctcaaggagcagggacaggaccaggagacggaggtccaggtctcgc
tccaggagtcccaagcgaagcaagagaagtcggagcaggggtcggaggtcactgtctgcc
gatcgagcatctaggtctcgttcgagatctccaaacaaggacagcaaatccaaaggatca
tcatcgtccggtgtgaaaacggaaacagcggtcaaggttgaggggaaggtagagacggag
gtgaagaaggaagcggaagtaaagcaagaggtcaaggtcaaggaagagaagaaggatgag
agtaaggaggtcaaggaagagaaaggattggttttggagcaaagacgactggaagaggag
atgcaaaagagaagagagcgaatcgagagatggagaatggagaggaagaagacgatggaa
gccgctgcaggaccctccaagaccgaaggggaggaggagaaggtcgacgcccctcctcag
aagccaggcaagaagtggagtctggaggatgatgatgatgctgatgacgaagcagaagca
gaggatgaatccaaagaaagtaagccaccccctggaagtctgggtaaggacgacgaggaa
aagatggacgtcgacaagaaggaggatgagaagaagacggaggaggatgacgacgatgac
atcgaccctctggatgcgttcatgatgggtgtccaagcggaggtgaagaaaattagcagt
aaggacaagaagccccctccaccggttgagaaggctgttaaagcaaacaataatggaaat
ggtacaggagaggctcctaagttcagcatagtgacaggagtagtgaagaagaagagtgtt
ccggtccccacaccggtcgtcaccacacccaggaggaaaggggaactcatggagaatgat
caagatgccatggagtattcctctgaggaagaaaaagagagtaacctgatggacaccatg
gcagccatcgagcagaagaagaagaaagaattagccaaggtagatcattctaagattgaa
tatcaacccttcaggaaggatttctacatagaggtaccggagcttgcccgtcttacccca
gaagaggttgacaagagacgttctgacctggaaggtgtcagggtccgtggtaaaaattgt
cctaaaccggtagactcctgggtgcagtgcggcgtctccaagagagtcctcacagtcctc
aagaagaataactatgagaagcccacacccatccagtgccaagccatcccggcgatcatg
tcgggccgcgacctcatcggtatcgccaagaccgggagcgggaagacgatggcgtttcta
ttgcctatgttcagacacatcatggaccaagaccctcttgagggtgacgatggacctgtc
tcactgataatgactcctaccagagaactagccatgcagattttcaaggagtgcaagaag
ttcaccaagtccatgggattgagggcagtatgtgtatatggcggtacaggcatcagtgaa
cagattgccgagctaaagcgtggagcggagatcatcgtctgcactccagggagaatgata
gacatgcttggtgctaataatggtcgcgtcacaaatcttcgtcggtgtacctaccttgtc
ttggatgaagctgatagaatgtttgacatgggatttgaaccacaggtgatgaagattgtg
gagaacatccgtcctgataggcagacagtcttgttctctgccacgtttccccgtcagatg
gaggcactggccaggaagatcttgaccaagcctattgaagtccaggtcggaggtcgtagt
gtggtgtgctccgatgtcacccagcatgctttgattcttgaggaggatcagaagttcttg
aagctcctggaactgttgggctactacgacgaaggacagatcctagtctttgtggagaag
caggaatctgcagatcttctactcaaagacctaatgaaagcatcctacccctgccttgcc
ttacatggtggtattgaccagtatgacagagattccatcattcaggatttcaaagctgct
aatgtgaagatcctggttgcaacatcggtggcagcaagaggtctggatgtgaagaaactt
gttcttgttgtcaactatgattgtcctaatcactacgaggattatgtacacagagtcggg
cgcacagggagagcaggaaacaagggattctcctacaccttcctgacccctgaacaggcc
aagtatgcaggggatgtcatcaaggcctttgagctgagtggttccaaggtacctggagag
cttacagagatgtggagcttctactgtaatcaacaaaaatctgaaggtaaagaagtgatc
aggaacagtggtttcagtgggaaaggtttcaagtttgatgataccgagagagaactggcc
aatgagaagaagaagcttcagaaggctgctcttggtcttcaagattccgatgatgaagat
gctggcatggacattgacgagaagatcgaaaccatgtttgcatcgaagcgacgcgtcaag
gacgtcacggccgacgaaatgcctatcatccagcaaccccaagcgaatcctgccacaccc
cagcaaccgggggtggtcccgggcggtgccgcggctgtacccgctggggccaaccaggcc
atgttgagcctggctaagcggatggcagcaaagatcaataagaacctggagagcgagagg
aacgtggatatgatacagcaggctacccaagcggtgatgaaaggcgctacgcttgggcaa
ccttctgtatcagcattcacgagggccgagcagcttgcaggtaaactcaatgccaaactc
aactacattccaaagattaacgaagaagagaaagaggaggagcaacccaagccaaccttc
aggaaatacgaggaggaactggagatcaatgacttcccacagactgccaggtggaaggtc
acatcaaaggagaaccttgcccagatccaagactacagtgaagcagggatcaccatcaga
ggcacctacttcccaccaggcaaggaacccaaggaaggagaaggagaaagaaagctctat
ctggccatcgaaagtgtcagtgaaagagctgtttctaaggccaaggcagagatcacaaga
ttagtcaaggatgaactagtcagattgcaaaactcatatcaacctaccaacaaaggaaga
tacaaggttctttga
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integrated database retrieval system
