Lytechinus variegatus (green sea urchin): 121431697
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Entry
121431697 CDS
T11173
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like-B isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121431697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121431697
Enzymes [BR:
lvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121431697
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121431697
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121431697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_1
LRR_4
LRR_LRWD1
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
121431697
NCBI-ProteinID:
XP_041485284
LinkDB
All DBs
Position
18:complement(9547306..9581529)
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AA seq
598 aa
AA seq
DB search
MPKDKYDKDKYDNHSHHNGINTHKGHNGISRERSHRIMTQDEVIGGKKSHWEGLELTGTI
RNISPQLWKLNHLTVLYMTDNQLTRVPADICQLTHLVKLDLSYNKLRSLPVEIGDLISLR
ELMLNNNQLRLLPYELGRLIITLQVLGLKGNPLASEVMGIYNEPKGTHKLLSYMLDHIHP
PGTLPPARPWIHVAHPNRNKPSAIFSVMSYNVLCDKYATKQIYAYCPTWALEWEYRRKGI
MDEILGASSDIICLQEVETEQYYNFFSPTLKQHGYDSVFSPKSRAKTMSEEDRKYVDGCA
IFFRTSKFALVKEHLVEFNQLAMANAEGSEDMLNRVMTKDNIGLAALLETREGCYEGSAF
QQEVSNARQQLLVANVHIHWDPEFSDVKLIQTMMLMNELKKIIEEESVSFRPGGGGGAGG
SGGGSGGGGGGGSSQSTSGTIPLVMCGDLNSLPDSGVVEYLEMGKISVRHPDFKDLNYKV
LRNFSSNSETNGHISHSFQLKRVYQNNPMRFTNYTFDFKGIIDYIFFSRQAMSVLGLLGP
MDFEWIDTSKVHGCPNASIPSDHFSLLTEFEMPLPSAPSSPPSSTLYHPTPNYPLARR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagataaatatgataaagataagtacgacaaccatagtcaccacaacggaatc
aacactcacaagggccacaatgggatatcaagagaaaggagtcatcgtatcatgacacag
gacgaggtgatcgggggcaagaagtcacattgggagggtctagaacttacaggtactata
cgcaatatcagtccgcagctttggaaattaaatcatttaaccgtgctgtatatgactgac
aatcaactgacccgagtgcctgctgatatctgtcagcttactcatcttgtcaaattagac
ctgtcgtataacaagctgaggagcctaccggtagagataggggacctgatatctctcagg
gaattaatgctgaacaacaaccagctgcggttgttaccctatgagctagggcggctcatc
atcaccctccaggtgctaggtctgaagggaaatccccttgcctcagaagtcatgggtatc
tacaatgaacccaaaggaacccacaagcttctctcctacatgttggaccacatacatccc
ccaggcacattgcccccagcaaggccttggatacatgtagcacatccaaacagaaataaa
ccttcagccatattctctgtgatgagctacaacgttctatgtgacaagtacgcaaccaag
cagatctatgcctactgccctacgtgggcgctggagtgggagtatagaagaaaagggatc
atggacgagatccttggtgcaagttcagacatcatatgcctccaggaagtcgaaacggaa
cagtattacaatttcttcagcccaaccctcaagcagcacggctacgacagtgtcttcagc
ccgaagtccagggctaagaccatgtcagaggaggacagaaaatacgttgatggctgtgcc
atattctttaggaccagcaaatttgcgttagtcaaagaacaccttgttgaattcaaccag
ctagcgatggcaaacgctgaagggtcagaggacatgcttaacagggtgatgacgaaagac
aatattgggttggcagcgcttctagaaacgagagagggatgctatgaaggttcagcgttc
caacaggaagtctccaatgccaggcagcagctcctggtagcaaatgtccacatccactgg
gaccccgagttcagcgacgtcaaactgatccagaccatgatgctcatgaacgagctcaag
aagatcatcgaggaggagtcggttagcttcagaccgggaggagggggcggagccggtggg
agcggagggggaagcggaggaggcggcggcggtggtagcagccagagtacttcagggacc
attccattagtgatgtgcggggatctcaactccttgcccgactctggtgttgttgagtac
cttgagatgggaaaaatctccgtccgccatcctgacttcaaagacctcaactacaaggtc
ctccgcaacttctcctccaactcggagaccaacgggcacatttcgcattcgttccagctg
aagcgggtctaccagaacaaccccatgcgcttcaccaattacacctttgatttcaagggc
atcattgattatatcttcttctcgaggcaggccatgtctgtcctgggcctcctgggtcca
atggactttgaatggatcgacacgagcaaggtccacggctgccccaacgccagcataccc
tcagaccacttctcgctcctcaccgaattcgagatgccactcccctcagcgccgtcgtcg
cccccatcgtcgacgctctaccatccaacgccgaactaccccctcgcgaggcggtag
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