Lytechinus variegatus (green sea urchin): 121431705
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Entry
121431705 CDS
T11173
Name
(RefSeq) DNA-binding protein SMUBP-2-like
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lvg03009
]
121431705
03012 Translation factors [BR:
lvg03012
]
121431705
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121431705
5.6.2.5 RNA 5'-3' helicase
121431705
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
Other ribosome biogenesis factors
121431705
Translation factors [BR:
lvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121431705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
ResIII
AAA_16
AAA_22
Helicase_RecD
UvrD-helicase
Flavi_DEAD
nSTAND3
DEAD
AAA
T2SSE
NTPase_1
SRP54
Herpes_ori_bp
NPHP3_N
bpMoxR
UvrD_C_2
cobW
ABC_tran
Zot
SLFN-g3_helicase
AAA_14
AAA_7
Motif
Other DBs
NCBI-GeneID:
121431705
NCBI-ProteinID:
XP_041485293
LinkDB
All DBs
Position
18:complement(972973..1012978)
Genome browser
AA seq
1045 aa
AA seq
DB search
MSLIGEFVRKHLDLLDIERQAEIEQTSDLLGKLSVRELERRGVCLLKLRCASQATGLYGR
TVLTFEPLRSQGQDGKLPAHNFGPGDIAGVSFSNSDTTSASLLASGIVSKVTGSSVSVAF
EENVEGISRGHDDTFKLTKLANDVTYRRLKKALHELEEYRTGPAVRLIEVLFGESDLGSP
IRLPASSDNESGSVEFFNSNLNDSQRDAVTFALCQREVAVIHGPPGTGKTTTVVEVIQQA
VKQNMKILACAPSNVAVDNLLERLSSNPSCSMVRLGHPARLLPSIQRFSLDAILASSDGA
AIVRDIRRELDSTLSQIRKTKDKDEKHRLKDEMKYLRQDLKSREQKAIQDILMAADIVLA
TNTSASTKGPLRALQQGHFDLVVIDECAQSLEAACWIPLLNAPKCLLAGDHLQLPATIMS
KQAAEDGLATSLMERIISLHGNRVVRMLTTQYRMNDDIMKWSSDQLYDGKLESHQSVASH
LLKDMPSIVENENTCIPLLLIDTAGCDVLELELEDEVSKGNEGEADIVSHHVSNLITSGL
SPSQIAVIAPYNLQVDLLRLRLSSKYPTLEIKSVDGFQGREKEAVIISMVRSNDRGEVGF
LTEDRRINVAITRARRHLAVICDSQTVGKHPFLKSLIDYFNDHGEVRTAFEYDEVLASSS
DVPRPDHLVFKSKTTSSTHKSTKASGTVLKGQRKGQVKKAEVKGQSLSTDPVQRSKEDAT
FLNETKRRLLEFKKEPEERLLEFPPSLNSHQRYLVHELAEGYGLYHLSTGEGKERQIVVR
KERTEPPQVERTLEERNALVTRNDDSNVSVEELVEDFETENKMELLSDREEEAEEEATEE
DGAIAGNIEKSELEQTKEKEREVKSPDTELASANLLKCKFCGKRLPPGNRLLHEIHCEKT
QAEKKRQNSAGLNKKHRNKAQKQKQKQNLEDASAEDFDTLVAMAMKRDNECNYKRCREKI
TITGLMCEFCTRRYCFKHHVPEIHGCEEMARHHVRHQMLKTKVVTNGSGVKEKKVDPAHR
ANLQKKLGAKLGQLGEQRQRKQKPK
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgataggggagtttgtgagaaagcatctggacttactggacatagaaagacag
gcagagatagagcagacaagtgatctactaggtaagctctctgtacgtgagcttgaaaga
cgaggagtctgccttctgaaactcagatgtgccagtcaagctacaggactctatggaagg
acagtcttgacctttgaacccttgaggtcacagggtcaagatggcaaacttccagctcat
aactttggaccaggtgatatagcaggagtgagcttctccaacagtgacaccacctctgca
tctttgcttgcttctggaattgtgtcaaaggtcactggatccagtgtctctgttgcattt
gaagagaatgtggaggggatatcacgcggtcatgacgacacattcaaactcaccaagcta
gcgaacgatgtcacatatagaagacttaaaaaagctcttcatgaattagaggagtaccgt
actggacctgctgttcgattgattgaagtcttgtttggagagagtgatctaggatcacca
atcaggcttccagctagtagtgataatgaatctgggagtgtggaattctttaacagcaat
ctgaatgatagccaaagagatgccgtgacctttgccctatgtcagcgagaggttgctgtg
attcatggcccacccggtacaggcaagaccaccacagtggttgaagttatccaacaagca
gtgaagcaaaatatgaagattctcgcctgtgctccatctaacgttgcagtggacaacctc
ttagaacgtttgtcctcaaatccttcatgctctatggtccgtcttggtcatcctgctcgg
ttacttccaagcattcagaggttctcattagatgcaatccttgcttccagcgatggagca
gctatcgtcagagacatccggagagaactagactctacactgagtcaaatccggaagaca
aaagacaaagatgagaagcaccgtttgaaagacgagatgaaatatcttcgacaggattta
aaatccagagagcagaaagccatccaagatatcctgatggctgctgatatcgtcttggca
actaacaccagtgcttccaccaaaggacccctgagggcgctacaacaaggacattttgac
ttggttgtcattgatgaatgtgctcagtctcttgaagctgcatgttggatcccccttctt
aatgcaccaaaatgtcttcttgctggtgatcatttacagctacctgccaccattatgtca
aaacaagcagcagaagatgggctggcaacctccctgatggaacgcatcataagtctccat
ggcaacagagtagtgcgaatgttgaccactcagtacaggatgaatgatgacatcatgaaa
tggtcgtctgatcagttgtatgatggaaaactagaatcgcatcaatctgtggcttcccac
cttctcaaagacatgccatctatcgttgagaatgagaatacctgtatcccactacttctg
attgatacagcgggatgtgatgtacttgaactagagttagaagatgaagtatcaaaaggc
aatgaaggagaagcagacatagtaagtcaccatgtaagcaacctcatcaccagcggcttg
tccccgtcacagattgctgtcattgcaccttacaacctgcaagtagacctcctgcggctg
aggttgtcgtcaaagtatcctactcttgagatcaagtctgtggacgggttccaggggcgg
gagaaagaagcagtcatcatctcgatggttcgatccaatgacagaggtgaggtgggattc
ctgactgaggatcgtcgtatcaacgtcgcaatcacccgagcgcgacgccatcttgcagtc
atttgtgattctcagaccgttggaaagcatccattcttaaagagtctcatagattacttc
aacgaccatggggaagtacgtacggcttttgagtatgatgaagttcttgcctcttcctcc
gatgtaccaagaccagatcacctggtcttcaaatcaaagactactagtagcacccacaag
agtaccaaggcatcaggaacagtacttaagggacagaggaaaggtcaagttaagaaggca
gaggttaaaggtcaaagtttaagcactgaccctgtgcaaaggagtaaggaagatgctacc
ttcctgaatgaaaccaagagaagattgttagagtttaagaaagaaccagaggagaggctt
cttgagtttcctccttcactcaattcccatcagagatatcttgtgcatgagctcgcagaa
ggctatggactgtaccacttgagtacaggtgaggggaaagagagacagattgttgttaga
aaggaaaggactgagccacctcaggttgaaaggacattagaagaaagaaacgctcttgtc
accaggaatgatgattctaacgtgtctgttgaggaactggtggaggactttgaaacagag
aataaaatggagcttttatctgatcgggaggaggaagccgaagaagaagcaacggaagag
gacggtgccatagctggtaacatagagaagtcagagttagagcagaccaaagagaaagag
agagaggttaagagccctgatacagaacttgcttcggcgaatcttttgaaatgtaaattt
tgtgggaagcgtttaccgccgggaaaccggctcctgcatgagatccactgcgagaagacg
caagccgagaagaaacgacagaactcggctgggttgaataaaaagcatagaaataaagct
cagaaacagaagcagaagcagaatcttgaggatgcctctgcggaagactttgatacgctc
gtcgccatggcaatgaagcgcgataatgagtgtaactataaacgatgccgagagaagatc
acaattacgggattaatgtgcgagttctgtacgagacggtattgctttaagcatcacgta
ccggaaatccacggatgcgaggagatggcacgccaccatgtacggcatcagatgttgaag
acaaaggttgtaaccaacggcagcggggtcaaggagaaaaaggttgaccctgcacatagg
gctaatcttcaaaagaaactaggtgctaaacttgggcagcttggtgaacaaagacaacgc
aaacagaaaccaaaataa
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integrated database retrieval system
