Lytechinus variegatus (green sea urchin): 121431973
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Entry
121431973 CDS
T11173
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121431973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121431973
Spliceosome [BR:
lvg03041
]
Complex B
Other components
Prp19-related factors
121431973
Complex C
121431973
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
zf-CCCH_2
RRM_YTH1
zf-CCCH
Nup35_RRM_2
zf-CCCH_4
RRM_3
RRM_PARP14_3
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
121431973
NCBI-ProteinID:
XP_041485706
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All DBs
Position
18:7196587..7205022
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AA seq
482 aa
AA seq
DB search
MAVSKSANTYNRLNWEEADFPILCQTCLGDNPYVRMTKEKFGRECKICQRPFTIFRWCPG
ARMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAALNVKDEMPKSDVNKEYYSQN
MERELANVEGNQPLGAVGKAQAPSDLLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRFYGVDDPVADKLMRRAAAMPKLESPEDRMITTLYVGGLG
DKVTEEDLKGHFYQFGELRSINVVPKQQCAFVTFTNRQGAEAAAENSFQKLIIKGRRLNI
KWGKPQAQQGSGKKDEEGVKEQHYEPVPGLPGVLPHPPQMNQDHGNAPFPPPMLPPPPMN
NPPHPHPQFRPPPGYGMGMPPPPRLPPPPHHMPPGNRARFPPPPPGGPPPRMPRFPPPPP
FGGRRDGPMPPHMRHRMPLPPPPNVPPPPRSQQGSAKPPAVHYPSQDPQRMGTGVEETST
KS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgagcaaaagcgcaaacacatataatcgactgaattgggaagaagctgatttc
cctattctgtgtcaaacatgccttggtgataacccatacgttcgcatgaccaaggagaag
ttcggacgagagtgtaagatatgtcagcgtcccttcaccatattccgttggtgccctggt
gctcggatgaggttcaagaagacagaagtctgccaaacttgtagtaagctgaagaacgtc
tgtcagacgtgcctgcttgatctagagtatggtttaccgattcaagtccgtgatgctgcc
ctcaatgtcaaagatgaaatgcccaagtctgatgtcaacaaagagtactactcacagaac
atggaaagagagttggccaatgtggagggtaaccagccactgggtgcagtagggaaggcc
caagcccctagcgatctccttctcaagttggctcggaccacaccctactacaagaggaac
aggcctcatatatgttctttctgggtcaagggagagtgtaagagaggagaagagtgccca
tacaggcacgagaagcctacagacccagatgaccccctggccgatcagaacatcaaggat
cgtttctacggagtggatgatcccgtagccgataagctgatgagacgagcagcggccatg
cccaagctagagtcccctgaagatcggatgatcactacgctctatgtcggtggacttgga
gacaaggtcacagaggaagatctcaagggtcacttctatcagtttggtgagctacggagc
atcaacgtagtccccaagcagcagtgtgctttcgtcaccttcaccaacaggcaaggggcc
gaggcggctgcagagaactccttccagaagctcatcatcaaaggtcgaaggttaaacatc
aagtgggggaagccccaagcccagcaggggtcagggaagaaagatgaggaaggggtgaag
gaacagcactatgaaccggttccgggactgcctggagtattaccacatccaccccaaatg
aaccaagaccacggcaatgcacctttccctcccccgatgctccctccccctccaatgaac
aaccctccccatccccacccccagttccgacctcctcccgggtacggcatgggtatgccc
ccacccccacggttaccccctccccctcatcacatgcccccgggcaacagggcacggttc
ccccctccccctccaggtgggcctcccccgaggatgcccaggttccctccaccccctccc
ttcgggggcaggagggatggtcccatgccgccgcacatgcgacacagaatgcccctgccc
cctccccccaatgtgcccccacccccaaggtcacagcagggtagcgcaaagcccccagcc
gtacattacccctcacaggatccgcagaggatggggacgggtgtcgaggaaacgtctaca
aaatcttag
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