Leucobacter viscericola: G7068_03905
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Entry
G7068_03905 CDS
T07181
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lvi
Leucobacter viscericola
Brite
KEGG Orthology (KO) [BR:
lvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvi03019
]
G7068_03905 (hrpB)
Enzymes [BR:
lvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G7068_03905 (hrpB)
Messenger RNA biogenesis [BR:
lvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G7068_03905 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_11
AAA_30
ResIII
Flavi_DEAD
ParA
nSTAND3
NTPase_1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QIK64685
UniProt:
A0A6G7XJD4
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All DBs
Position
809669..812248
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AA seq
859 aa
AA seq
DB search
MTPVFNLTSIGVGLPVAEHQDELESAAKFGVMVVTAPPGTGKTTFVPPLVANLVRDRGTT
LLTQPRRVAVRAAANRIAMLDGTAVGDGVGFTVRGERRTSNHTRLEVLTPGVLLRRLLAD
PGLDGIGAVILDEVHERSVDSDLLLGMIAEVRTLRDDLLVVAMSATLDASRVAELLAGDA
GAAPIVDIPSALHPLRKDHAPFAGTRLDDRGVTRNYLDHLAAVTLEAQQAEACDTLVFVP
GAREVDELVRRLRTNARGPLEILPLHGRVPARDQDRAVRGRGPGDPPRVVVSTSLAESSL
TVPGVHLVVDSGLSREARRDRARSMTGLVTVSASRASAEQRAGRAARQGPGRVVRAYSEA
DFARMPAESAPEIASADLTDTALLLAAWGTPGGVGLALPSAPPAAAMDEAVEELRALHLT
DETGHPTLQGTRVARLPIGVRDARALLAGAIELGDVRLAAEVVAAISDDHRDSGADLPRL
LRELRTGRAPGAERWRRESQRLERIAAAELSTVAAPAEAFSASAPGAAGDAPGIVAALGR
PEWIAHRVSEGSRGYLLASGTRAALPENSGLIGSEWIAVREVQRAEGRAADGAGAVIRLA
APIAEADALRIGDTLLARKRLARVEDGRVRVREEHRFGAILLSSTPTAPSDADTGPAFAA
HLRERGLAALNWSEAAIGLRARLALLHRELGEPWPAMSDEALLTPLEQWLGPDLDRLGAA
SSLHRIDVASALRRLLPWPEAARLEELVPERLAVPSGSTVGIRYPDPADPAAPPVISVKL
QEMFGLAQTPRLVEGRVPVQVHLLSPARRPLAVTDDLSSFWNGPYQEVRREMRGRYPKHP
WPEDPWAAQATARVTRPRT
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
attacgccggtcttcaacctcacctccataggagttggacttcccgtcgcggagcatcaa
gacgagctcgaatcggccgcgaagttcggcgttatggtcgtgacggccccgccgggaacc
ggcaagacaaccttcgtgccaccactggtcgcaaacctggttcgtgatcgtggcacgacc
ctcctcacccagccccggcgtgttgcggtgcgagccgccgcgaaccgaatcgcgatgctt
gacggcactgccgttggtgatggagtcggctttaccgttcgcggcgaacggcgcacctca
aaccacacgcgtcttgaggtcctcacgccgggtgtgctgctgcgacgcctgctcgctgac
ccgggcctcgacggcatcggggccgtgattctcgacgaggtacacgagcgctcggttgac
agcgatctgttgctcggcatgatcgcggaagttcgtacgctgcgcgacgacctcctcgtg
gttgccatgtcggcaacactcgatgcttcccgcgtcgcggaactgttggccggagacgcc
ggagcggccccgattgtcgatatcccttctgccctgcacccgctccgaaaagaccacgct
cccttcgcgggaacccgcctcgatgatcgtggtgtcaccaggaattacctcgatcatctc
gccgctgtgacactcgaagcgcagcaggccgaagcctgcgacacgctcgtttttgttccc
ggcgctcgtgaggtcgatgaactcgtgcgccggctgcgcacaaacgcgcgcggtccactc
gagatacttccattacacggcagggtgccagcacgggatcaggatcgcgcggtgcgcgga
cgaggtccgggtgacccgccgcgggtcgttgtcagtacttcactcgccgaaagttcgctc
actgtgccgggagtgcatctcgtggtcgattccgggctctcccgagaggcacggcgcgac
cgcgcacgcagcatgactggcctcgttaccgtaagcgcgtctcgggcgagcgccgagcag
cgcgctggtcgagcagcgcgtcaggggccgggccgagtcgtgcgcgcgtattcagaggcc
gacttcgcgcggatgcccgccgagtcggcgccggaaatcgcctcggccgacctcaccgat
accgcgctgctcctggccgcctggggcaccccgggaggtgtcggtttggcgctccccagc
gctcccccggccgcggcaatggacgaggccgttgaggaacttcgcgccctgcacctgacc
gacgagacgggacaccccactttgcaaggaacccgcgtggctcgactgccaatcggggtg
cgggacgcgcgggcgctgctcgccggggccattgagctcggcgatgtccgtctcgccgca
gaggtggtcgccgcaatctcagacgaccaccgcgactcgggtgccgatctgccgcggctc
cttcgcgaactgcgcaccggtcgagcacccggcgccgagcggtggcgccgcgagagccag
cgactcgagcggatcgctgcggcagagctctcgaccgttgccgcacccgctgaggcgttc
tcggccagcgcgcccggcgcagccggtgacgcacccggcatcgtggcggcgcttggtcga
cccgagtggatcgcgcaccgcgtctccgaggggtcccgtggctacctgctagcaagcggt
accagagctgccctccccgagaacagcgggctgattggaagtgaatggatcgccgtgcgc
gaagtgcagcgtgccgagggacgcgccgccgacggtgcgggagcggtgatccgtctcgcc
gcaccaatcgcggaggccgatgcactgaggatcggcgatacccttctcgcccgcaagcgc
ctagctcgggtggaggatggccgggtgcgggtgcgagaggaacaccggttcggcgcgatc
ctgctctcctcgacccccaccgcaccaagcgatgccgataccgggccagccttcgcagcc
cacctgcgcgagcggggtcttgctgcgctcaactggtcggaggcggcaatcgggctgcga
gcccgactcgcactgcttcatagggaactcggcgaaccctggcctgcaatgagcgacgag
gcgctgctgactcccctcgagcagtggctcgggcccgaccttgatcggctcggcgcggca
tcttcgctgcaccgcatcgatgtggcctcggcgctgcgtcggctactcccctggcccgag
gcggcgcggctcgaagagttggtcccggagcggctggcggtgccctcgggctcaacagtg
ggcattcgttacccggatcccgccgatcctgccgcccctcccgtgatctcagtcaagctg
caggagatgtttggccttgcgcagacaccgcgactcgtggagggcagggtacccgtgcaa
gtgcatctgctctctcccgcgcgccgcccgctcgcggtcaccgacgatctctcctcgttc
tggaacggcccataccaagaggtgcgccgtgagatgcgcggccgctacccgaagcacccc
tggcccgaggacccctgggcggcccaagccacggcccgcgtgacacgcccgcgcacataa
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