Leucobacter viscericola: G7068_04480
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Entry
G7068_04480 CDS
T07181
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lvi
Leucobacter viscericola
Pathway
lvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7068_04480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvi03400
]
G7068_04480 (mfd)
Enzymes [BR:
lvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7068_04480 (mfd)
DNA repair and recombination proteins [BR:
lvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7068_04480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
UB2H
Motif
Other DBs
NCBI-ProteinID:
QIK62545
UniProt:
A0A6G7XDA7
LinkDB
All DBs
Position
complement(950248..953886)
Genome browser
AA seq
1212 aa
AA seq
DB search
MTLRGIDRLLETSESFARALDASARDAEFAVTEGLRAPLIAGLVRRRRENGDRGPLLVIA
ATSREADSLRSALASLMPEATTVEFPAWETLPHERLSPSAETVGRRADALRVLRESVNHA
ENGPLILVASVRAALQPVSPHAVEARSIVLRAGEASDPLETVARELVELAYTRVDMVTRR
GEFAVRGGILDVFPPTEDHAARVDFFGDEVDQIRHFAVSDQRSAGDPLTELELWPARELL
LTPEVREKAAELLPRYPALSTLLEKMSQGIPVEGMESLLPQLVPGLKPLTSLLPEGGAVL
VASPERVASRAVSLSETNREFLEAAWHAATAGADAPIPVDDSGMLSMSQLRKASKGRPWW
SVSSFVRDEDDTEDADEHVHYADFVTINVHGGPVLKSSSAEATGATINLLSERLAAGWHA
IVTARGIGLVERARDVLSEAGAAARLVEELPEVLEDGVVYLVPGDASSGFESEEAKLLLV
SEAEFFGRAVSSQAASGQKLAKRRGKNVVDPLKLVNGDYVVHETHGIGRFVELTQRMVPT
GIGRDATKALREYLVLEYASTKRGMPKDKLYVPTDQLDQLSRYVGGEAPALSKMGGNDWS
NAKKKARKAVRDIAVELVKLYSARVASKGFAFSSDTPWQHELEEAFPFAETLDQLTTIDE
VKRDMEKSIPMDRLVAGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTLLVNQHLETFQD
RFAGFPVQLRPLSRFQTDKESKETIEGLAAGTVDVVIGTHRLLSENVLYKDLGLVIIDEE
QRFGVEHKDKLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATAPEDRHPILTFVG
PRSDKQIGAAIRREMLREGQVFFVHNRVSSISRVAAQIAELVPEARVAVAHGKLSEHQLE
QVVQDFWERKYDVLVSTTIIETGLDIANANTIIIDAADKYGLSQLHQLRGRVGRSRERAY
AYFLYDPERPLTEHAHERLETLATNNELGAGMQVALKDLELRGAGNLLGGEQSGHIAGVG
FDLYLRMIGEAVNTFKGEDVQSNTELVLELPVDAHIPEEYVESERLRLEAYQKFSAASHP
QAPEDHVALVLEELTDRYGEPPEEVQRLAAVSALRRRASRLGLTKVVAAGPALRLEPVKL
LDSRKMRMNRMYPGSRYTEASQNLQIPLPGGTASSRSPLAGVGQRHVGDEGDVVAWTGRV
LATLLEEDAAAA
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgacactgcgtggcatcgaccgactccttgaaacctcagagtcgtttgcccgagcgctc
gacgcgagtgcaagggacgcggagttcgccgtcaccgagggccttcgggcaccgctcatc
gcgggtctcgtgcgcagacgcagggaaaatggggatcgcggaccactcctcgtcatcgcc
gcgaccagccgcgaggccgattcgctgcgcagcgctctcgcttcgctcatgccagaggcc
accaccgtcgagtttccagcgtgggagacactgccacacgagcgtctcagccccagcgct
gagaccgtggggcgacgagcggacgctctacgagttttgcgtgagtccgtaaaccacgcg
gagaacggcccgctgatcctggtcgcatcggtgcgcgcagcgctgcagccagtatcgccc
cacgcggttgaagcccgctcgattgtgctgcgagctggggaggcttctgacccgctcgaa
accgttgcgcgggagcttgttgaactcgcttacacccgcgtcgatatggtcactcgccgc
ggagagttcgccgtgcgcggcggcattcttgacgttttcccgccaactgaagaccacgcg
gctcgcgttgatttttttggtgacgaagtagaccagatcaggcactttgcggtctcagat
cagcgcagcgcgggggatcccctcactgagctggagctgtggcccgctcgcgagctgctg
ttgacccccgaggtgcgcgagaaagcggcagagttgctgccccgatacccggcactcagc
actctgctcgaaaagatgagccaggggattcctgttgagggcatggagagtctgctgccg
cagctcgtgccggggctcaagcccctcacctctctgctccctgagggtggtgccgtgctc
gttgcctcgcctgaacgtgttgccagcagggcggtcagcctgtcggaaacgaaccgcgaa
tttttggaggccgcctggcacgcggcaacggccggagcggatgcgccgatccccgtcgac
gacagcgggatgctctcgatgtcgcaactgcgcaaagcgtcgaaggggcgaccgtggtgg
tcggtttcgagttttgtgcgcgatgaagacgacaccgaagacgctgacgagcatgtgcac
tacgccgacttcgtcaccatcaacgtgcacggcggccccgtactgaaatcgtcgagtgca
gaggccacaggggcaacgattaacctgctgagtgagcgactggccgccgggtggcacgcc
atcgttacggcacgggggatcgggctggttgagcgtgcccgtgacgtgctctcggaagcg
ggagccgcagctcggctggttgaagaactgccagaggtacttgaagacggtgtggtctac
ctcgtgcccggagacgcatcgagcggcttcgagagcgaggaagcgaagctgctgctggta
tcggaggcggagttcttcggtcgcgcggtttcgagccaggccgcgagcgggcagaagctt
gcgaagcgccgtggcaaaaacgtggtggatccgctgaagctcgtgaacggcgactatgtt
gtgcacgagacgcacggcatcgggcgttttgttgaactgacccagcgtatggtgcccact
ggtatcggtcgagacgcgacaaaagcgctgcgtgagtacctggtgctggagtacgcgtca
accaaacgtggcatgcccaaagacaaactctacgtgccgacggatcagctcgaccagctc
tcccgctacgtgggtggtgaggctccggccctctcaaagatgggcggcaacgactggtca
aacgcgaaaaagaaggcccgcaaagcggtgcgcgacatcgccgtcgaactggtcaaactc
tactccgctcgtgttgcttccaagggctttgccttctcgtcagacactccctggcagcac
gaactcgaagaagcctttccgttcgccgagacgctcgaccagctcaccaccattgacgag
gtgaagcgcgacatggagaagtcgatccccatggaccggctcgtcgcgggcgacgtggga
ttcggtaagaccgaggtggccgtgcgggcggcgttcaaggcggtgcaagacggcaaacag
gtagccatgctcgtgccgaccacactgctggtcaaccagcacctcgagacttttcaggat
cgcttcgccggattcccggtgcagctcaggccgctcagccggttccagaccgacaaagag
tcgaaagagaccatcgaggggctcgctgctggcactgtcgacgttgtcatcggcacacac
cgtctgctgtccgaaaacgtgctctacaaagacctcggacttgtcatcattgacgaggag
cagcgctttggcgtcgagcacaaggacaagctcaagaaactgaagacgaacgtcgacatc
cttgcgatgagcgcaacgcccatcccgcgcacactcgagatggcggtcaccggcattcgc
gaaatgtcgacactcgcaactgccccggaggatcgtcacccgatcctcacgtttgtcggc
cctcgaagcgataagcagatcggtgccgcgatccggcgcgagatgctgcgcgaggggcag
gtgttctttgtgcacaatcgggtttcttcgatttctcgggttgccgcgcaaattgctgaa
cttgtgcccgaggcccgcgttgccgttgcccacggcaaactgagcgagcatcagcttgaa
caggtcgtgcaagacttctgggagcgcaagtacgacgtgctcgtctcgacaaccatcatc
gagaccggcctcgacatcgcaaacgccaacacgatcatcatcgacgccgccgacaaatac
ggactgagccagctccaccagctgcgtggccgtgtcgggcgaagccgcgagcgcgcctac
gcctacttcctttacgaccccgagcggccgctcaccgaacacgcgcacgagcgcctcgaa
acgctcgccacgaataacgagctcggtgcgggtatgcaggtcgccctcaaagaccttgag
ctgcgtggcgcgggcaacctgctcggtggggaacagtcgggccacatcgcaggcgtggga
ttcgatctctacctgcgtatgatcggcgaggccgtgaacacgttcaagggtgaagacgtg
cagagcaacaccgagttggtgcttgagctgcccgtcgatgcgcatattcctgaggagtat
gttgagagcgagcggctgcggcttgaggcctaccagaagttctcggccgcatcacacccg
caggcgccagaggaccacgttgcgctggtgctcgaagagctcaccgaccgctacggcgaa
ccgcctgaagaggtgcagcgtctcgccgcagtctcggcgctgcgtcgccgtgcgtcacgg
cttggccttaccaaggtggtcgctgctggtcccgcgctgcgcctcgaaccggtgaaactg
ctcgactcgcgcaaaatgcgcatgaaccgcatgtatcccgggtctcgctacaccgaggcg
agccagaacctgcagattccgctgcccggcggcacagcgtcatcacgcagcccgctcgcg
ggggtcggccagcggcacgtcggagacgagggggacgtggtcgcctggaccggtcgtgtg
ctcgccacgctactcgaggaggacgctgcggctgcgtga
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