Lacinutrix venerupis: BWR22_04665
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Entry
BWR22_04665 CDS
T04680
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lvn
Lacinutrix venerupis
Pathway
lvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWR22_04665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvn03021
]
BWR22_04665
03019 Messenger RNA biogenesis [BR:
lvn03019
]
BWR22_04665
Transcription machinery [BR:
lvn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BWR22_04665
Messenger RNA biogenesis [BR:
lvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BWR22_04665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
APX99632
UniProt:
A0A420ZEK9
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All DBs
Position
1024024..1025748
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AA seq
574 aa
AA seq
DB search
MFEISQLKEMKLPELQEMAKKLSIPKFRSLKKLDLVYQILDKQASNPKAVQEVKVDAPPA
KSTTTKTPAKPKRERVQRTTANKPNPRTKSQPKANQETLAFKEDDVKENNADKDKKEVKE
SKEDNKQAQSKTPAKTQQPKPQHKKPVHNHQNKKDDKKENNSNRQNNNQNKHQNKHQNRN
QGKNGNTHGNNDNRNRYREPDFEFDAIIESEGVLDVMQDGYGFLRSSDYNYLSSPDDIYV
SQSQIRLFGLKVGDTVLGNVRPPKEGEKYFPLIRVNKINGQSPDVVRDRVSFEHLTPLFP
QEKFNIAEKQSTISTRIMDLFAPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQ
MILLIDERPEEVTDMQRNVRGEVIASTFDKEAHEHVKIANIVLEKAKRLVECGHDVVILL
DSITRLARAYNSVQPASGKILSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTETG
SKMDEVIFEEFKGTGNMELQLDRKISNRRIFPAIDLTSSSTRRDDILLDDKTIQRMWVMR
KYLADMNPVEAMEFINERFKQTRTNEEFLISMNG
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatctcacaattaaaagaaatgaagcttcctgaattgcaggaaatggctaaa
aaacttagtataccaaagtttcgttcattaaaaaaattagacttagtttatcaaatctta
gataagcaagcatctaacccaaaggcagtacaagaagtaaaagtagatgcaccaccagca
aaatcaactacaacaaaaactccagctaagcccaaaagagaacgtgtacaacgtaccaca
gcaaataaacctaacccaagaacaaagtctcaaccaaaagctaatcaagaaactttagct
tttaaagaagacgatgttaaagaaaataatgctgataaagataaaaaagaggtaaaagag
agtaaagaggataataagcaagcgcaatcaaaaacgcctgcaaaaactcagcagccaaaa
ccacagcataaaaagcctgttcataatcatcaaaataaaaaagacgataaaaaggaaaat
aactctaatcgtcaaaacaataatcaaaataaacaccagaataaacaccaaaaccgaaat
caaggtaaaaatggtaatacacatggtaataacgataatcgtaatcgttatcgagagccg
gattttgaattcgatgccattattgagagtgaaggtgttttagatgtcatgcaggatggt
tatggatttttaagatcttcagattataattatttatcatctccagacgatatttatgtg
tcgcagtctcaaatccgtttatttggattaaaagtaggagatacagtattaggtaatgtt
agacctccaaaagaaggagaaaagtattttccacttattagagtgaataaaataaatgga
cagagtccagatgtggttagagaccgtgtgtctttcgagcatttaactccattgtttcct
caagagaaatttaacattgcagagaagcaatctacaatttctacacgtattatggacttg
tttgctccaataggaaaaggccaacgtggtatgattgtttcccagccaaaaactggtaaa
acaatgttgttaaaagatgttgctaatgcaattgctgcgaatcatccagaagtatatcaa
atgattttacttatagatgaacgtccagaggaagttacagatatgcagcgtaatgtaaga
ggagaagttattgcttccacttttgacaaagaagcacatgagcacgtaaaaattgcaaat
attgttttagaaaaagcaaaacgattagtagaatgtggacacgatgttgttattttatta
gattctattacacgtttagcaagagcttataattctgtacagccagcatctggaaaaata
ttgtctggaggtgtagatgcaaatgcattacataaaccaaaacgtttttttggagcagca
cgtaatattgaaaatggaggttctttaacaattatagctaccgcattaactgaaacaggc
tctaaaatggacgaagttatttttgaagaatttaaaggtactggtaatatggaattacaa
ttagatcgtaaaatttctaaccgtcgtatttttccagctatcgatttaacatcgtcaagt
acaagacgagacgatatacttctagatgataaaactattcaaagaatgtgggtaatgaga
aaataccttgcagatatgaatcctgtagaagctatggagtttataaacgaacgttttaaa
caaacgagaactaatgaagaatttttaatctctatgaacggttaa
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