Lacinutrix venerupis: BWR22_06165
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Entry
BWR22_06165 CDS
T04680
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lvn
Lacinutrix venerupis
Pathway
lvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWR22_06165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvn03019
]
BWR22_06165
03009 Ribosome biogenesis [BR:
lvn03009
]
BWR22_06165
Enzymes [BR:
lvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BWR22_06165
Messenger RNA biogenesis [BR:
lvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BWR22_06165
Ribosome biogenesis [BR:
lvn03009
]
Prokaryotic type
rRNA helicases
BWR22_06165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APX99908
UniProt:
A0AAC9LKQ4
LinkDB
All DBs
Position
complement(1355080..1356948)
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AA seq
622 aa
AA seq
DB search
MSTFQELGLNDDLLQGITDLGFETPSEVQEKAIPILLQDEGDLVALAQTGTGKTAAFGFP
MLQKIDVNSRTTQGLILSPTRELCLQIANEMKAYGKYCKGLNVVAIYGGSSITDQAREVK
RGAQIIVATPGRMKDMISRKLVDITKIQYSVLDEADEMLNMGFKEDITDILSGTPKDKST
WLFSATMPKEVARIAKDFMHEPKEITVGHKNESTSNVTHEYYLVNARDRYQALKRLADAN
PDIFSVIFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDIVMKQFRTRQIQMLVATD
VAARGIDVDDVTHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLRSIERI
INKKFEKKEIPNGMEICEVQLMSLANKIHNTEINHEIDKYLEDINTMFEDTSKEELIKKF
FSVEFTRFFNYYQKAKDLNISAGDPNRDGGRVSSGNATRFFINVGEKDGFNWMTLKDFLK
EQLGLTKDDLFKVDTKDTFSFFNTEKEHEEKVLAHFNEFKHEGRFVNVEVTEDKPNRGGR
GRGRSGGGRRRDGGNGGDRRRSERRSGGRNDDRRSRRSEGSDRGDRKRRNDDKPSRSRRS
DGGDRDKSEFKTTHSRPRRSRR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagaattaggtcttaacgatgacctattacaaggtattacagattta
ggttttgaaacaccatctgaagtacaagaaaaagcaatcccaattttattacaagacgaa
ggcgatttagtcgctttagcacaaacgggaacaggtaaaaccgcagcctttggtttccct
atgcttcaaaaaattgacgttaacagtcgtacaactcaaggtttaattttatcgccaacg
cgtgaactttgtttacaaattgcaaacgaaatgaaagcttacggtaaatactgtaaaggt
ttaaatgttgtagctatttatggtggttctagtattacagaccaagcacgcgaagtaaaa
cgtggcgcacaaattattgtagcaacgcctggtcgtatgaaagatatgattagcagaaaa
ttagtagatattactaaaattcaatattcggttttagatgaagccgatgagatgctaaac
atgggttttaaagaagatattacagatattctttctggaacacctaaagataaaagtaca
tggttattttctgcaactatgccaaaagaagtagcaagaatagctaaagattttatgcac
gaaccaaaagaaattacggttggacataaaaacgaaagtacctctaacgtaactcacgaa
tactatttagtaaacgctcgtgatcgttaccaagctttaaaacgtttggcagatgctaat
ccagatattttttcggttatattttgtagaacaaaacgtgacacacaaaaagttgccgag
caattaattgaagatggttatagcgcaggagctttacacggtgatttaagtcaaaaccag
cgtgatattgtaatgaaacaatttagaacacgccaaatacaaatgcttgtagcaacagat
gttgccgctcgtggtattgacgtagacgatgttacacacgtaattaactaccaattaagt
gacgaaatagaaacatacacacaccgaagcggtcgtactggtcgtgcaggaaaaacaggt
gtttctatggtaattgtttctaaaagcgaagtacgcagacttagaagtattgagcgtatt
attaataagaaatttgagaaaaaagaaattcctaacggaatggaaatttgcgaagtacaa
ttaatgtctttagcaaataaaattcataatacagaaattaatcacgaaatagataagtat
ttagaagacattaatacaatgtttgaagatacttctaaagaggagttaattaaaaaattc
ttctctgtagagtttacacgtttctttaactactaccaaaaagcaaaagacttaaacata
tcggctggagatccaaaccgcgatggtggtcgtgtttcaagtggtaacgcaacacgtttc
tttattaacgtaggagaaaaagatggttttaactggatgactttaaaagactttttaaag
gaacaactaggtttaactaaagacgatttatttaaagtagatacaaaagatacattctct
ttcttcaacacagaaaaagaacacgaagaaaaagttttagctcattttaatgagtttaaa
cacgaaggtcgctttgtaaatgttgaagtaaccgaagacaaaccaaatcgtggtggtcgt
ggtcgcggtcgctctggtggcggaagaagacgcgatggcggaaacggtggcgatagaaga
cgtagcgaaagacgttctggcggaagaaatgacgacagacgcagcagacgtagcgaagga
tctgacagaggtgatagaaaaagaagaaatgacgataaaccatcacgctctagaagaagc
gatggtggcgatagagataaaagtgaatttaaaacaacacattctcgaccaagacgttct
agaagataa
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