Limimaricola variabilis: T8T21_00025
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Entry
T8T21_00025 CDS
T09625
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr00260
Glycine, serine and threonine metabolism
lvr00460
Cyanoamino acid metabolism
lvr00630
Glyoxylate and dicarboxylate metabolism
lvr00670
One carbon pool by folate
lvr00680
Methane metabolism
lvr01100
Metabolic pathways
lvr01110
Biosynthesis of secondary metabolites
lvr01120
Microbial metabolism in diverse environments
lvr01200
Carbon metabolism
lvr01230
Biosynthesis of amino acids
lvr01240
Biosynthesis of cofactors
lvr04981
Folate transport and metabolism
Module
lvr_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
T8T21_00025 (glyA)
09102 Energy metabolism
00680 Methane metabolism
T8T21_00025 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
T8T21_00025 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
T8T21_00025 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
T8T21_00025 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
T8T21_00025 (glyA)
Enzymes [BR:
lvr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
T8T21_00025 (glyA)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
WPY94551
LinkDB
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Position
complement(2457..3752)
Genome browser
AA seq
431 aa
AA seq
DB search
MNASTRDDGFFTETLDSRDPEIAKAITDELGRQRHEIELIASENIVSAAVLEAQGSVLTN
KYAEGYPGRRYYGGCEFADVAENLAIDRAKQLFSCEFANVQPNSGSQANQGVFQALLQPG
DTILGMSLDAGGHLTHGAKPNQSGKWFNAVQYGVRQQDQQIDYDRIQELATEHQPKMIIA
GGSAIPRIIDFPRMREIADSVGAYLLVDMAHFAGLVAAGLYPSPFPHAHVATTTTHKTLR
GPRGGMILTNDEAIAKKINSAIFPGIQGGPLMHVIAGKAVAFGEALRPEFKTYQQQVVKN
AQALADQLMKGGLDIVTGGTDSHLMLVDLRPKGVKGNATEDALGRANITCNKNGIPFDPE
KPAVTSGIRLGSPAGTTRGFGEAEFRQIADWIVEVVDGLAANGAEGNAEVEEKVRGEVEE
LCKRFPLYPNL
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcatccacccgcgacgacggcttcttcaccgaaacgctcgacagccgcgacccc
gagatcgccaaggcgatcaccgacgaactcggccgccagcgccacgagatcgagctgatc
gccagcgagaacatcgtctcggccgccgtgctcgaggcccagggctcggtgctcaccaac
aaatatgccgagggctatccggggcggcgctactacggcggctgcgaattcgccgacgtg
gccgagaacctcgccatcgaccgcgccaagcagctgttctcctgcgaattcgccaacgtg
cagccgaactccggctcccaagcgaaccagggcgtgttccaggcgctgctgcagcccggc
gacaccatcctcgggatgagcctcgacgcgggcggtcacctgacccacggcgccaagccg
aaccaatcgggcaagtggttcaacgcggtccagtacggcgtgcgccagcaggaccagcag
atcgactacgaccggatccaggagctcgcgaccgagcaccagccgaagatgatcatcgcc
ggcggctcggccattccgcggatcatcgacttcccgcgcatgcgcgagatcgccgacagc
gtcggtgcgtatctgctcgtcgacatggcgcatttcgcgggcctcgtggcggcgggtctc
tacccctcccccttcccgcacgcgcatgtcgccaccaccaccacgcacaagacgctgcgc
ggcccgcgcggcggcatgatcctcaccaatgacgaggcgatcgccaagaagatcaactcg
gcgatcttcccgggcatccagggcggtccgctgatgcatgtcatcgccggcaaggccgtg
gccttcggcgaggcgctgcgccccgagttcaagacctaccagcagcaggtcgtgaagaac
gcccaggcgctcgccgaccagctgatgaagggcgggctcgacatcgtcaccggcggcacc
gacagccacctgatgctggtcgacctgcgccccaagggcgtgaagggcaacgcgaccgag
gacgcgctgggccgcgccaacatcacctgcaacaagaacggcatccccttcgacccggag
aagccggccgtgacctccggcatccgcctcggctcgcccgcgggcacgacgcgcggcttc
ggcgaagccgagttccggcagatcgccgactggatcgtcgaggtggtcgacgggctggcg
gcgaacggcgccgagggcaatgctgaggtcgaggagaaggtgcgcggcgaggtcgaggaa
ctctgcaagcgcttcccgctctaccccaacctctga
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