Limimaricola variabilis: T8T21_03050
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Entry
T8T21_03050 CDS
T09625
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
T8T21_03050 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvr03400
]
T8T21_03050 (xth)
Enzymes [BR:
lvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
T8T21_03050 (xth)
DNA repair and recombination proteins [BR:
lvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
T8T21_03050 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
A6_N
Motif
Other DBs
NCBI-ProteinID:
WPY95121
LinkDB
All DBs
Position
complement(619140..619922)
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AA seq
260 aa
AA seq
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MKLATFNINGVKARIGALSDWLAESRPDVALLQEIKSADEGFPREHFEDMGYTVETHGQK
GFNGVAILSRLPLEDVTRGLPGDDSDEQARYIEATVIGETRPVRVGCLYLPNGNPAPGPK
YDYKLAWMERLRARAQALLELEAPALLAGDWNVIPQPEDAARPEAWIEDALFRPETRAAF
RRIETLGFTDAFRARVRGPGHYSFWDYQASSWERNNGIRIDHLLLAPQAADLLNDAWIER
EVRGREKPSDHVPVWIDIDA
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgccaccttcaacatcaacggcgtgaaggcgcggatcggcgccctgtcggac
tggctggccgaaagccgccccgacgtggcgctgctgcaggagatcaagtcggccgacgaa
ggcttcccgcgcgagcatttcgaggacatgggctacacggtcgaaacccatggccaaaag
ggcttcaacggcgtcgccatcctgtcgcgcctgccgctcgaggacgtgacgcgcggcctg
cccggtgacgacagcgacgagcaggcccgctatatcgaggcgaccgtgatcggcgagacc
cggccggtgcgggtgggctgtctctacctgccgaacggcaaccccgcccccggcccgaaa
tacgattacaagctggcctggatggagcggctgcgggcgcgggcgcaggcgctgctggaa
ctcgaggcgccggcgctgctcgcgggcgactggaacgtgatcccgcagcccgaggacgcc
gcccggccagaggcctggatcgaggacgcgctgttccggcccgagacccgtgccgccttc
cgccggatcgagacgctgggcttcaccgacgcgttccgcgcgcgggtgcgcgggccgggc
cactattccttctgggactatcaggccagctcttgggagcggaacaacggcatccgcatc
gaccaccttctgctcgccccgcaggccgccgatctgctcaacgacgcctggatcgaacgc
gaggtgcgcggccgcgagaagccgtccgaccacgtgccggtctggatcgacatcgacgcc
tga
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