Limimaricola variabilis: T8T21_04355
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Entry
T8T21_04355 CDS
T09625
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T8T21_04355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvr03400
]
T8T21_04355 (mfd)
Enzymes [BR:
lvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T8T21_04355 (mfd)
DNA repair and recombination proteins [BR:
lvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
T8T21_04355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
MFD_D3
AAA_30
SecA_DEAD
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WPY95367
LinkDB
All DBs
Position
complement(876343..879807)
Genome browser
AA seq
1154 aa
AA seq
DB search
MAKTNPSRITVSGAPEGFDATLVLKEADKASGPVIHVARDDKRMAAMRAALAFHAPDMPV
VTFPAWDCLPYDRVSPAPEISAARMAVLAGLLHGMPERYVLLTTLNAATQRVPARATMRG
AAFSARVGDRIDEAGLRDFLVRMGFTQSPTVTEPGDYAIRGGIIDIFAPGQGGPVRLDMF
GDVLDGARRFDPATQRTTEKLDRIELAPVSEVILDEAAITRFRQSYRIEFGAAGTDDPLY
EAVTAGRKQAGMEHWLGFFQDDLETLFDYLPGAPVTLDDQIAPQRDARWALITDAYETRR
HALAQKGRMDSVYKPAPPALLYLDDDAWMAATEGRRVLRFAPLPQATGPGVIDAGGRIGR
NFSPERQQENISLFAALASHVKERMKAGPVVIASYSEGARERLSGLIEDEGLTETIHVRD
WAGVGRRGLHLAVWPLEHGYQTDDLTVISEQDVLGERLIRRARKKRRADNFLTEAQSLSP
GDLVVHVDHGVGRYHGLEVVTAAGAAHECLLLEYAENAKLYLPVENIELLSRFGHEEGML
DKLGGGAWQAKKAKLKERIRQAADRLIRIAAERALRTAPRLEPQDSIWEQFLARFPYDET
EDQLQAIEDVLNDLESGHPMDRLICGDVGFGKTEVAIRAAFVAALSGVQVAVIAPTTLLA
RQHYKNFAERFRGFPINVRPLSRFVSAKEASETRAGLADGKVDIVVGTHALLAKSVKFRD
LGLLIIDEEQHFGVNHKERLKALRTDVHVLTLTATPIPRTLQMSLTGVRDLSIIGTPPVD
RLAIRTYVSEFDTVTVREALLRERYRGGQSFFVVPRVADLPEIEEFLKTEVPEISYVVAH
GQMAAGELDERMNAFYDGRYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGR
VGRSKTRAYAYLTTKPRAPLTPGAEKRLRVLGSIDSLGAGFTLASQDLDIRGAGNLLGEE
QSGQMREVGFELYQQMLEEQIAKIRSGEAEGLSEDEGQWAPQINLGVPVLIPEEYVPDLD
VRLGLYRRLSELTTKVELEGFAAELIDRFGPLPKEVNTLMLVVRIKAMCLKAGISQLDGG
PKGATIRFHNDKFVSPEGLVEFIQDQKGQAKVKDNKIVVMRDWSKEADKIRGAFGIAREL
AEKVKAAKKAKAEA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagacgaaccccagcaggatcaccgtctcgggcgcgcccgagggcttcgacgcg
acactggtcctgaaggaggcggataaggcctccggcccggtcatccatgtcgcccgcgac
gacaagcggatggcggcgatgcgcgcggccctggcgttccacgcgcccgacatgccggtc
gtcaccttcccggcctgggattgtctgccctatgaccgcgtctcgcccgcgcccgagatc
tcggcggcccggatggcggtgctggcagggctgctgcatggcatgcccgaacgctatgtc
ctgctgaccacgctcaacgccgcgacccagcgcgtgcccgcgcgcgccaccatgcgcggc
gcggccttctcggcccgcgtcggcgaccggatcgacgaggcggggctgcgggatttcctc
gtgcggatgggctttacccagagtccgaccgtgaccgagccgggcgattacgcgatccgc
ggcggcatcatcgacatctttgcgcccgggcagggcgggccggtccggctcgacatgttc
ggcgacgtgctcgacggggcgcgccgcttcgacccggccacccagcgcaccaccgagaag
ctcgaccggatcgagctggcgccggtctccgaggtgatcctcgacgaggcggcgatcacc
cgcttccgccagtcctaccggatcgagttcggcgccgccggtacggacgatccgctctac
gaggcagtgacggccgggcgcaagcaggcgggcatggagcattggctcggcttcttccag
gacgatctggaaacgctgttcgactatctccccggtgcaccggtgacgcttgacgaccag
atcgcgccgcagcgcgacgcccgctgggcgctgatcaccgatgcctacgagacgcgccgc
catgcgctggcgcagaaggggcggatggattcggtctacaagcccgcccctcccgcgctt
ctctatctcgacgacgatgcctggatggccgcgaccgagggccgccgcgtgctgcgtttc
gcgccattgccacaggccaccggccccggcgtgatcgacgcaggtgggcggatcgggcgc
aatttctcgcccgaacggcagcaggagaacatcagcctcttcgccgcgctggcgagccat
gtgaaggagcgcatgaaggccgggccggtggtcatcgcctcctattccgagggtgcgcgc
gaacggctctcggggctgatcgaggacgaggggctcaccgagacgatccatgtgcgcgac
tgggccggcgtcggcaggcgcggcctgcatctcgcggtttggccgctggagcatggctac
cagaccgacgacctgaccgtgatctcggagcaggacgtgctgggcgagcggctgatccgt
cgcgcccgcaagaagcgtcgggccgacaacttcctcaccgaggcgcaaagcctcagcccc
ggcgatctggtcgtccatgtcgatcacggcgtcggccgctatcacgggctcgaggtggtg
accgccgccggggcggcgcatgaatgcctgctcctcgaatatgccgagaacgccaagctc
tacctcccggtcgagaacatcgaactgctttcgcgcttcggtcacgaggaagggatgctc
gacaagctgggcggcggcgcttggcaggctaagaaggccaagctcaaggagcgtatccgt
caggctgccgaccggctcatccggatcgccgccgagcgcgcgctcaggactgcgccgcgg
ctggagccgcaggacagcatctgggagcagttcctcgcccgcttcccctatgacgagacc
gaggaccagctgcaggcgatcgaggacgtgctcaacgatctcgagagcggccatccgatg
gaccgtctgatctgcggcgatgtcggcttcggcaagaccgaggtggcgatccgcgcggcc
tttgtcgcagcgctctcgggcgtacaggtcgccgtcatcgcgccaacgacgctgctcgcg
cgccagcactacaagaactttgccgaacgcttccgcggctttccgatcaatgtccgaccg
ctgtcgcgcttcgtctccgccaaggaagcgtccgagacccgtgccggccttgccgatggc
aaggtcgacatcgtcgtgggcacccatgcgctgctcgccaagagcgtgaagttccgcgat
ctgggccttctcatcatcgacgaggagcagcatttcggcgtcaaccacaaggaacggctc
aaggcgctcaggaccgatgtccacgtgctgacgctcaccgcgacgccgatcccgcggacg
ctgcagatgtcgctcaccggggtgcgcgacctgtcgatcatcggcacgccgccggtcgac
cgtctcgcgatccgcacctatgtcagcgagttcgacaccgtcaccgtgcgcgaggcgctg
ttgcgcgaacgctaccggggcgggcagagcttcttcgtcgtgccgcgcgtggccgacctg
ccggagatcgaggagttcctcaagaccgaggtgcccgagatctcctatgtcgtggcgcat
ggccagatggcggcgggcgagctcgacgagcggatgaacgctttctatgacggccgctac
gacgtgctgctcgcgaccaccatcgtggaatcgggcctcgacatcccgaccgccaacacg
atgatcgtgcatcgcgccgacatgttcggcctggcgcagctctaccagatccgtggccgg
gtcgggcgctccaagacccgcgcctatgcctatctgacgaccaagccgcgcgcgccgctc
acccctggagccgaaaagcggctgcgcgtgctgggcagcatcgactcgcttggcgcgggc
ttcacgctggccagccaggacctcgacatccgcggtgctggcaacctcctcggtgaggaa
cagtccggccagatgcgcgaggtcggcttcgagctttaccagcagatgctggaggagcag
attgccaagatccgttcgggcgaggccgaagggctttccgaggatgaggggcagtgggcg
ccgcagatcaatctcggcgtgccggtgctgatccccgaggaatacgtgcccgacctcgac
gtgcggctgggcctttaccgacgcctgtccgagctgaccaccaaggtggagctggagggc
tttgccgccgagctcatcgaccgcttcgggccgctgcccaaggaggtcaacacgctgatg
ctcgtcgtccggatcaaggcgatgtgcctcaaggccgggatcagccagctcgatggcggg
cccaagggcgcgaccatccgcttccataacgacaagttcgtctcgcccgaggggttggtc
gaattcatccaggaccagaagggccaggccaaggtgaaggacaacaagatcgtcgtgatg
cgcgactggtcgaaggaagccgacaagatccgcggcgccttcggtattgcccgcgagctg
gccgaaaaggtgaaggccgccaagaaggcgaaggccgaggcatga
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