Limimaricola variabilis: T8T21_04720
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Entry
T8T21_04720 CDS
T09625
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8T21_04720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvr03019
]
T8T21_04720
03009 Ribosome biogenesis [BR:
lvr03009
]
T8T21_04720
Enzymes [BR:
lvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
T8T21_04720
Messenger RNA biogenesis [BR:
lvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T8T21_04720
Ribosome biogenesis [BR:
lvr03009
]
Prokaryotic type
rRNA processing factors
T8T21_04720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WPY95437
LinkDB
All DBs
Position
complement(961641..964394)
Genome browser
AA seq
917 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVCDGNKVEEFDFESQSRRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEEKAYAESLKAEAEAASSDEDDDAEAEGE
EGDRPRRRRSRGRRRAADAGSDAVATQDGDAVSGMETFDADAEDDGDAAAKDEDIESVAE
EDDSEDVRPVRKPRPKRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLM
PNTARGGGISRKITNAADRKKLKEIAAEMDVPEGAGLIIRTAGSQRTKSEIKRDYEYLQR
LWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYSKDIDEVIVEGVEGFRTARDFMKMIMP
SHAKNVKPYTDSLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRAT
KEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERRNNTAVEKRFKEKLKTD
RARIQVGRISGFGLLEMSRQRLRPGMLEATTQPCPHCHGTGLLRSDENVALSILRQLEEE
GVRGRTKEVLVRLPYAIMNFLMNHKREHVAAIEQRYGMAVRVEGDAALVSPDFVIEKFKT
ATRAVPEAAPVVSSAALMEQLDAEIDLEALEEEDETEEAEAEVETTATAAPAETTGPRAE
DEDEDGKPRKKRRRRRRRRGANGEGAETQAEDGSDAGDAEGDATQDEAQPATVAEIAQSS
ATPDAAADAAPEVTSDAAPAAEAAPAAEAEAPAKPKRTRRKKAEPKPAEGAETADEAAAE
EAPKPKRTRRKKAEPKPAEAGEATGEAAAEEAPKPKRTRRKKAEPKAEEVAETAPVPAAA
EPAAAGAAQQDAGDAPEQSPASETPEVMPEVAEQVAQTVAETRRAPEPEEAPRETVDAGG
DDDDKKPRRRGWWSISR
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgacgccacgcacgcggaagagacccgcgtcgtggtctgt
gacggaaacaaggtcgaggaattcgacttcgaaagccagagccgccgtcagctcgccgga
aacatctacctcgccaaggtcacgcgcgtagagccgtcgctgcaggcggccttcgtcgat
tacggcggcaaccggcacggcttcctggccttctccgagatccaccccgactactaccag
atcccggtcgcggatcgcgaggcgctgctcgccgaggaaaaggcctatgccgaaagcctg
aaggccgaggccgaggccgcctcgtcggatgaggatgacgacgccgaggccgagggcgag
gagggtgaccgcccgcgtcgccgccgctcgcgcggccgtcgccgtgccgccgatgccggc
agcgatgccgtcgccacccaggacggcgacgccgtctccggcatggagaccttcgacgcc
gatgccgaggatgacggcgacgcggctgccaaggacgaggatatcgaaagcgtcgccgaa
gaggacgacagcgaggatgtgcgcccggtccgcaagccccggcccaagcgctacaagatc
caggaagtgatcaaggtccggcagatcatgctggtccaggtcgtcaaggaagagcgcggc
aacaagggcgcggcgctgaccacctatctctcgctcgccggccgctactgcgtgctgatg
cccaacaccgcccgtggcggtggcatttcgcgcaagatcaccaacgccgccgaccgcaag
aagctcaaggagatcgcggccgagatggacgtgcccgagggcgcgggtttgatcatccgc
accgccggatcgcagcgcaccaaatccgagatcaagcgcgactatgaatacctgcagcgc
ctgtgggagcagatccgcgagctgacgctcaagtcgatcgcgcccgccaagatctacgag
gaaggcgacctcatcaagcggtcgatccgcgacctctactccaaggatatcgacgaggtg
atcgtcgagggcgtcgagggcttccgcaccgcacgcgacttcatgaagatgatcatgccg
tcgcacgccaagaacgtgaaaccctacaccgacagcctgccgctcttcgcgcgctaccag
gtcgagagctacctctccggcatgttcaacccgaccgtgcagttgccgtcgggcggctac
atcgtgatcggtgtcaccgaggcgctggtcgccatcgacgtgaactccggccgtgccacc
aaggaaggctcgatcgagcagaccgcgctcaagaccaacctcgaggcagccgacgaggtg
gcgcgccagctgcgtctgcgtgacctcgccggcctgatcgtgatcgacttcatcgacatg
gacgagcggcgcaacaacaccgcggtcgagaagcgcttcaaggaaaagctcaagaccgac
cgtgcccggatccaggtcggccgcatctcgggcttcggcctgctggagatgagccgtcag
cgtctgcgcccgggcatgctcgaggcgaccacccagccctgcccgcattgccacggcacc
ggcctgctgcgctcggacgagaacgtcgccctgtcgatcctgcggcagctcgaggaagag
ggcgtgcgcggccgcaccaaggaagtgctggtgcgcctgccttacgccatcatgaacttc
ctgatgaaccacaagcgcgagcacgtggccgcgatcgagcagcgctatggcatggcggtg
cgggtcgagggcgacgcggcgctggtttcgcccgatttcgtgatcgagaagttcaagacc
gcgacccgggccgtgcccgaagccgcgccggtcgtctcttcggccgctctgatggaacag
ctcgacgccgagatcgacctcgaagcgctcgaggaagaggacgagaccgaggaggcggaa
gccgaggtcgaaaccaccgccaccgcggcccccgccgagaccaccggcccgcgggccgag
gacgaggacgaggacggcaagccgcgcaagaagcgtcggcgtcgtcggcgtcgtcggggt
gccaatggcgagggcgccgagacccaggccgaggatggctcggacgcgggtgacgccgaa
ggcgacgccacccaggacgaggcccagcccgcgaccgtggcggagatcgcccagagctcg
gccacgcccgacgctgccgctgatgccgcgccggaagtgacgtcggacgccgcccccgca
gccgaggctgccccggcggccgaggccgaggctccggccaagccgaagcggacccgtcgc
aagaaggccgagccgaagcccgccgaaggcgcggaaaccgccgacgaagcggctgccgag
gaagcgcccaagccgaagcggacccgccgcaagaaggccgagcccaaaccggccgaggcc
ggtgaggcgaccggcgaagcggcggccgaagaggcgcccaagcctaagcggacccgtcgc
aagaaggccgaacccaaggccgaggaggtcgccgagaccgcgcccgtgccggccgcggcg
gagcccgccgccgcgggtgccgcccaacaggacgccggcgacgcgcccgagcagtcgccc
gccagcgagacgcccgaggtgatgccggaggtcgccgagcaggtggcgcagaccgtggcc
gagacgcggcgcgcccccgagcccgaagaggccccgcgcgagaccgtcgatgcgggcggc
gatgacgacgacaagaagccgcgccgtcgtggctggtggtcgatcagccgctga
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