Limimaricola variabilis: T8T21_07070
Help
Entry
T8T21_07070 CDS
T09625
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lvr
Limimaricola variabilis
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvr03032
]
T8T21_07070 (topA)
03400 DNA repair and recombination proteins [BR:
lvr03400
]
T8T21_07070 (topA)
Enzymes [BR:
lvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
T8T21_07070 (topA)
DNA replication proteins [BR:
lvr03032
]
Prokaryotic type
DNA Topoisomerases
T8T21_07070 (topA)
DNA repair and recombination proteins [BR:
lvr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
T8T21_07070 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WPY95872
LinkDB
All DBs
Position
1439714..1442389
Genome browser
AA seq
891 aa
AA seq
DB search
MPVVVVESPAKAKTINTYLGSDYTVLASYGHVRDLPPKDGSVDTENDFDMRWEVGADSRK
HVKAIADALKNDPNLILATDPDREGEAISWHLQEALTARKVLKKDTPVSRVVFNAITKAA
VTEAMKNPREVDAPLVHAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVE
REMEIEAFKPREYWSVKAQLVTPRGQEYEARLTVLAGKKLDRFDIADRTQAEMAVQAVAS
RDLTVSSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARATMSAAQRLYEAGYITYMRTD
GIDMAPEAVMAARDEIKSRYGEAYVPKSPRMYKNKAKNAQEAHECIRPTDMSRDASKLAR
LEADQRKLYDLIWKRTLACQMEAARMERTTVDIASRDEQVVLRATGQVVLFDGFLKVYEE
GRDDVESDDDRRLPQIHQGEAAKFASGTLKGAFAKATEENKDAAVLGGPDAVLALQHHTQ
PPPRYTEATLVKRMEELGIGRPSTYASVIGTIQDREYVTKDKNRLIPQDKGRIVTIFLLN
FFKRYVEYDFTAELEEQLDDVSAGKADYKELLAQFWRDFSAAIAETSELRITEVLDVLDE
ALAPQLYPPREDGSDPRICPQCGTGKLHLKTSRTGGFVGCGNYPECRYTRPIGGDGADTG
ADRVLGEDGGDEIWLKTGRFGPYVQRGEPTEDQPKPPRASLPKGWQADAMDLDKALTLLS
LPRLVGHHPEDGEPVEAGLGRFGPFVKHGKLYANLKEVDEVFEIGMNRAVEVLAQKAAGR
GGRGAAAKALKELGEHPSGGAISVMPGRYGPYVKWEKVNATLPKDVEPETVTLEQAIALV
DAKAAKGGKKAPAKKAAAKKPAAKKTTAKAKTATKKAPAKKTTKKAADAAE
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgtcgtcgtcgaatctccggccaaggccaagacgatcaacacttatctcggg
tcggactacaccgtcctcgcctcctacgggcatgtgcgcgacctgccgccaaaggacggc
tcggtcgacaccgagaacgatttcgacatgcgctgggaggtcggagccgacagccgcaag
cacgtcaaggcgatcgccgacgcactcaagaacgacccgaacctgatcctcgccaccgac
cctgatcgcgaaggcgaggcgatctcttggcaccttcaggaggcgctgaccgcgcgcaag
gtgctcaagaaggacacaccggtgtcgcgcgtcgtgttcaacgcgataaccaaggccgcc
gtgaccgaggcgatgaagaacccgcgcgaggtcgacgcgcccttggtgcacgcctatctg
gcgcgccgcgcgctcgactacctggtgggtttcaacctgtcgcccgtgctgtggcgcaag
ctgcccggcgcgaaatctgccggccgggtgcagtcggtctgcctgcggctcatcgtcgag
cgcgagatggagatcgaggcgttcaagccccgcgaatactggagcgtgaaggcgcagctg
gtcacgccgcgtggccaggaatacgaagcgcgcctcaccgtgctggccggcaagaagctc
gaccgcttcgacatcgccgaccggacccaggccgaaatggccgtgcaggccgtggcctcg
cgcgatctcacggtatcttcggtcgaggcgaagccggcgtcgcgcaacccctccgcaccc
ttcatgacctcgacgctgcagcaggaagccagccgcaagttcggcatgggcgcgcgcgcc
acgatgtcggccgcccagcgcctctacgaggcgggctacatcacctacatgcggaccgac
ggcatcgacatggcgcccgaggcagtgatggccgcccgcgacgagatcaagtcgcgctac
ggcgaggcctacgtgcccaagagcccgcgcatgtacaagaacaaggccaagaacgcgcag
gaagcccacgagtgcatccggcctaccgacatgtcgcgcgacgcgtcgaaactggcgcgg
ctggaggcggaccagcgcaagctctacgacctgatctggaagcgcaccctcgcctgccag
atggaagccgcgcggatggagcgcaccaccgtcgacatcgccagccgggacgagcaggtc
gtgctgcgtgccaccggccaggtcgtgctcttcgacggcttcctcaaggtctatgaagag
ggccgcgacgacgtcgagagcgatgacgaccgccgcctgccgcagatccatcagggcgag
gccgccaagttcgcctccggcacgctcaagggtgccttcgccaaggcgaccgaggagaac
aaggacgcggctgttctcggcggccccgatgccgtgctggcactgcagcaccacacccag
ccgccgccgcgctacaccgaggcgacgctggtgaagcgtatggaagagctcggcatcggc
cgtccctcgacctatgccagcgtcatcggcacgatccaggaccgcgaatacgtcaccaag
gacaagaaccggctgatcccgcaggacaaggggcggatcgtcacgatcttcctgctcaac
ttcttcaagcgctacgtcgaatacgacttcaccgccgaactcgaagaacagctcgacgac
gtctcggccggcaaggcggactacaaggagctgctggcccagttctggcgcgatttctcg
gcggccatcgccgaaacctcggaactgcgcatcaccgaggttctcgacgtgctcgacgag
gcattggcgccgcagctctatccgccgcgcgaggatggctccgatccgcgcatctgcccg
caatgcggcaccggcaagctgcatctgaagacctcgcgcaccggcggcttcgtcggctgc
ggcaactatcccgaatgccgctacacccgcccgatcggcggtgacggcgccgacaccggc
gccgaccgggttctgggcgaggatggcggcgacgagatctggctcaagaccgggcgcttc
ggtccctatgtccagcgtggcgagccgaccgaggaccagcccaagcccccgcgcgcctcg
ctgccgaaggggtggcaggccgatgcgatggatctcgacaaggcgctgacgcttctgtcg
ctgccgcgccttgtcggtcaccacccggaggatggcgagccggtcgaggctgggcttggt
cgcttcgggcccttcgtcaagcacggcaagctctatgccaacctcaaggaggttgacgag
gtcttcgagatcggcatgaaccgggcggtcgaggtactggcccagaaagccgccgggcgc
ggtggccgcggcgcggccgccaaggcgctcaaggagctgggcgagcacccttcgggcggc
gcgatctcggtgatgccggggcgttacgggccctatgtgaaatgggaaaaggtcaacgcc
accctgcccaaggacgtggagcccgagacggtgacgctggagcaggcgatcgccttggtc
gatgcgaaggccgccaagggcggcaagaaggccccggccaagaaggcggcggcgaagaag
cccgccgccaagaagaccacggccaaggccaagaccgcgaccaagaaggccccggccaag
aaaactacgaaaaaggccgccgacgcggccgaatga
DBGET
integrated database retrieval system
