Limimaricola variabilis: T8T21_09835
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Entry
T8T21_09835 CDS
T09625
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8T21_09835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvr03019
]
T8T21_09835
Enzymes [BR:
lvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T8T21_09835
Messenger RNA biogenesis [BR:
lvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T8T21_09835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WPY96061
LinkDB
All DBs
Position
complement(1972823..1974094)
Genome browser
AA seq
423 aa
AA seq
DB search
MDFDMLGLAPRLVSALAEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI
DRLIKSGGKPAPKSARALVLAPTRELAKQIADNLEAYTRGSHLKTVLVVGGAGINGQIKR
MEGGTSLLVATPGRLIDLLDRRAVNLSQTEFLVLDEADQMLDMGFIHALRRIAPLLPKER
QTMLFSATMPKQMEELAQAYLTDAVRVQVNPPGKAADKIDQSIHFVAKAAKTEVLVELLD
QHRDELALVFGRTKHGMEKLSKQLAAAGFAAAAIHGNKSQGQRERAIRDFREGRVRVLVA
TDVAARGIDIPGVRHVYNYELPNVAENYVHRIGRTARAGADGRAVALCAPDEMGELKDIE
KAMKAAIPVASGTRWDPVEPEKKPRRGGGGGGRRFGGGAPKPEGVGAKPGRPNRRRRPAR
KAA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacatgctggggctcgcgcctcgtctcgtttccgccctcgccgagcagggc
atcaccgacccgaccccgatccagacccaggcgatcccgcacgccatgaacggccgcgac
gtgatgggtctcgcccagaccggcaccggcaagaccgcggccttcggcctgccgatgatc
gaccggctgatcaagtcgggcggcaagcccgcgccgaaatcggcccgcgccctggtgctg
gcgccgacccgcgagctggccaagcagatcgccgacaacctcgaggcctatacccgtggc
agccacctcaagaccgtgttggtcgtgggcggcgccgggatcaatggccagatcaagcgc
atggaaggcggcaccagcctgctggtcgccacgccgggccgtctgatcgaccttctcgac
cgccgcgccgtgaacctgagccagaccgagttcctggtgctcgacgaggccgaccagatg
ctcgacatgggcttcatccacgcgctgcgccggatcgcgccgctgctgccgaaagagcgg
cagaccatgctgttctcggccaccatgcccaagcagatggaagagctggcgcaggcctat
ctgaccgatgccgtgcgcgtgcaggtcaacccgccgggcaaggccgccgacaagatcgac
cagtcgatccatttcgtcgccaaagctgccaagaccgaggttctggtcgagctgctggac
cagcatcgtgacgagctcgcgctggtcttcggccgcaccaagcacggcatggagaagctg
tcgaagcagctcgccgccgccggcttcgctgccgccgcgatccatggcaacaagagccag
ggccagcgcgagcgggcgatccgcgacttccgcgagggccgggtccgggtgctggtcgcc
accgacgtcgccgcgcgcggcatcgacatcccgggcgtgcgccacgtctataactacgag
ctgccgaacgtggccgagaactacgtccaccggatcggccgcaccgcacgcgccggggcc
gatggtcgcgccgtggcgctctgcgcgcccgacgagatgggcgagctcaaggatatcgaa
aaggcgatgaaggccgcgatcccggtggcatccggcactcgctgggacccggtcgagccc
gagaagaagccgcgccgcggtggcgggggcggcggacgccgcttcggcggtggtgcgccc
aagccggaaggcgtgggggccaagccgggccgcccaaaccggcggcgcaggcccgcgcgc
aaggccgcctga
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