Limimaricola variabilis: T8T21_11315
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Entry
T8T21_11315 CDS
T09625
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lvr
Limimaricola variabilis
Pathway
lvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8T21_11315 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvr03021
]
T8T21_11315 (rho)
03019 Messenger RNA biogenesis [BR:
lvr03019
]
T8T21_11315 (rho)
Transcription machinery [BR:
lvr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
T8T21_11315 (rho)
Messenger RNA biogenesis [BR:
lvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T8T21_11315 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
OB_RNB
NACHT
AAA_25
ATPase_2
AAA
Fungal_virus_P2_C
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WPY93696
LinkDB
All DBs
Position
complement(2280845..2282119)
Genome browser
AA seq
424 aa
AA seq
DB search
MSQDRLNLADLKAQSPKDLLSLAEELEIENASTMRKGDMMFAILKERAEEDWVIGGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRQFSLRTGDTVEGVIQEPNENERYFALVS
VEKINFEDPERARHKVAFDNLTPLYPDERLKMEVEEEAATKDRSARIIDLVAPIGKGQRS
LIVAPPRTGKTVLLQNIAHSIEKNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDE
PASRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTTVPSSGKVLTGGVDANAL
QRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRV
FPAMDILKSGTRKEDLLVEKTDLQKTYVLRRILNPMGTTDAIEFLISKLKQTKTNSDFFD
SMNT
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaggaccgcctgaacctcgccgatctcaaggcgcagagcccgaaggatcttctc
tcgctggccgaagagctggagatcgagaacgcctcgacgatgcgcaagggcgacatgatg
ttcgccatcctcaaggagcgtgccgaggaggactgggtcatcggcggcgatggcgtgctc
gaggtgctgcaggacggcttcggcttcttgcgcagccccgaggcgaactatcttccgggt
ccggacgacatctacgtctcgcccgacatgatccgccagttctcgctgcgcaccggcgac
acagtcgagggcgtgatccaggagccgaacgagaacgagcgctacttcgcgctagtcagc
gtcgaaaagatcaacttcgaggatcccgagcgcgcccgtcacaaggtcgccttcgacaac
ttgaccccgctctatcccgatgagcggctgaagatggaagtcgaggaagaggccgcgacc
aaggatcgctcggcgcggatcatcgatcttgtcgcgccgatcggcaaaggccagcgttcg
ctcatcgtggcgccgccgcgtaccggtaagacggttctgctgcagaacatcgcccactcg
atcgagaagaatcatcccgagtgctatctcatcgtgctgctgatcgacgagcggcccgag
gaagtcaccgacatgcagcgctcggtgaagggcgaggtcgtctcctcgaccttcgacgag
cccgcttcgcgtcacgtcgcggtgtcggagatggtcatcgaaaaggccaagcgtctcgtc
gagcacaagcgcgacgtggtcatcctgctcgactcgatcacccgtctgggccgggccttc
aacaccacggtaccgagctcgggcaaggtcctcaccggtggtgtcgacgccaacgcgctg
cagcgccccaagcggttcttcggtgcggcgcgcaacatcgaggagggtggctcgctcacc
attatcgccaccgcgctgatcgacaccggttcgcgcatggacgaggtgatcttcgaagag
ttcaagggcaccggtaactcggagatcgtgctcgaccgcaaggttgcggacaagcgcgtc
ttcccggcgatggacatcctcaagtcgggcacccgcaaggaggatctgctggtcgagaag
accgatctgcagaagacctatgtgctgcgccgcatcctcaacccgatgggcaccacggat
gcgatcgagttcctgatctccaagctcaagcagaccaagaccaactcggacttcttcgac
tcgatgaacacctga
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