Limimaricola variabilis: T8T21_12345
Help
Entry
T8T21_12345 CDS
T09625
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T8T21_12345 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvr03021
]
T8T21_12345 (rpoC)
03400 DNA repair and recombination proteins [BR:
lvr03400
]
T8T21_12345 (rpoC)
Enzymes [BR:
lvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T8T21_12345 (rpoC)
Transcription machinery [BR:
lvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T8T21_12345 (rpoC)
DNA repair and recombination proteins [BR:
lvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T8T21_12345 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
BSH_RND
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WPY93893
LinkDB
All DBs
Position
2475476..2479717
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQELTNNPFNPLTPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMSEEQFLDAQDQYGADAFS
ANIGAEAIREMLAQIDLEAEAEQLRADLKEATGELKPKKIIKRLKIVESFIESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTIMRDGMKGEGMAFNSIEEVEHAL
NAGEVHMHAKITARIKQIDDEGNEVVKRYETTPGRLRLGALLPLNAKAPFDLLNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMSAGFKEAFKAGISFGKDDMVIPDAKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDRVTEAMMNTISANKRDENGAEAEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREHDCGTDRAITAEAAVNDGEVVSPLSERVLGRV
SADDVLKPGTDEVLVAAGELIDERKADLVEQSAVQKMRIRSPLTCEAEDGVCAMCYGRDL
ARGTMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQSGKVEFRNAN
LLENAAGEQIVMGRNMVIAIMGEDGEERASHKIGYGTKVFLKEGQDVKRGEKMFEWDPYT
LPIIAEKAGTVRFVDLVNGIAVREDTDDATGMTQRIVTDWRSVPKGNELKPEIIVVGEDG
EPVRTDSGNPVTYPMSVDAILSVEDGQQIQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIEPSEEGREKVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALAEYMIAEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
ISDSGESTLLKGEHVDKAEFDEANEKAIAKGGRPAQGSPVLLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSRVRKIAHDRDHSVIEQKRE
AAEQAAALAAPSEQPMSDDQFDTISARAEDSRD
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactcacgaacaacccgttcaatccgctgaccccggccaagaccttcgac
gagatcaaggtgagcctcgcctccccggagcgcatcctcagctggtccttcggcgagatc
aagaaacccgagaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgc
gcccgcatcttcgggccgatcaaggactacgagtgcctctgcggcaagtacaagcggatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgtcgaggtgacgctgcagaaggtccgc
cgcgagcgcatgggccatatcgagctggccgcgcccgtcgcccacatttggttcctcaag
tcgctcccgtcgcggatcggcctgatgctggacatgaccctgcgtgacctcgagcggatt
ctctacttcgagaactacgtcgtcatcgagccgggtctgaccgacctgacctacggccag
ctgatgagcgaggagcagttcctcgacgcgcaggaccagtacggcgcggacgcgttctcg
gccaatatcggcgccgaggcgatccgcgagatgctggctcagatcgacctcgaggccgag
gccgagcagctgcgcgccgacctcaaggaggcgaccggcgagctcaagcccaagaagatc
atcaagcgactgaagatcgtcgagagcttcatcgagtccggcaaccgtcccgagtggatg
gtgctgactgtgatcccggtgatcccgcccgagctgcgcccgctggtgccgctcgacggt
ggccgcttcgcgacctcggacctcaacgacctgtatcgccgggtgatcaaccgcaacaac
cgcctcaagcggctcatcgagctgcgcgcgcccgacatcatcgtgcgcaacgagaagcgg
atgctgcaggaatccgtcgacgcgctgttcgacaacggccgtcgtggccgcgtcatcacc
ggtgccaacaagcgcccgctgaagtcgctgtcggacatgctcaagggcaagcagggccgc
ttccgtcagaaccttctcggcaagcgggtcgacttctcgggccgttcggtcatcgtgacc
ggccccgaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttc
aagccgttcatctactcgcggctggaggccaagggcctgtcctcgaccgtgaagcaggcc
aagaagctcgtggaaaaagagcgtcccgaggtctgggacattctcgacgaggtgatccgt
gagcaccccgtcatgctcaaccgcgcgccgacgttgcaccgcctcggcatccaggcgttc
gaaccgcagctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtgcatgtgccgctgtcgctcgaggcgcag
ctcgaagcgcgcgtcctgatgatgtcgaccaacaacgtgctgtcgcccgccaatggcgcg
ccgatcatcgtgccgtcgcaggacatggttctcggcctgtactacacgaccatcatgcgt
gacggcatgaagggcgagggcatggccttcaactcgatcgaagaggtcgagcacgcgctc
aacgccggtgaagtgcacatgcacgccaagatcaccgcgcggatcaagcagatcgacgac
gagggcaacgaggtcgtcaagcgctacgagaccaccccgggccgtctgcgcctgggcgcg
ctgctaccgctcaacgccaaggcgccgttcgaccttctgaaccggctgctgcgcaagaag
gaagtccagcaggtcatcgacaccgtctaccgctattgcggccagaaggagtcggtcatc
ttctgcgaccagatcatgtccgcaggcttcaaggaggccttcaaggcaggtatctccttc
ggcaaggacgacatggtcatcccggacgccaagtggacgctggtcgacgagacccgcgac
caggtcaaggatttcgagcagcagtacatggacggcctgatcacccagggcgagaagtac
aacaaggtcgtggacgcctggtcgaagtgtaacgaccgcgtgaccgaggccatgatgaac
acgatctcggccaacaagcgggacgagaacggcgccgaagcggagccgaattcggtctac
atgatggcccactccggtgcgcgtggctcggtcacccaaatgaagcagctgggcggcatg
cgcggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtgctcgagtacttcaactcgacccacggcgcgcggaagggtctg
tccgacaccgctctgaagaccgcgaactcgggctacctgacccgtcgtctcgtcgacgtg
gcgcaggactgcatcgtgcgcgagcatgactgcggtaccgaccgggcgatcaccgcggaa
gcggcggtcaatgacggcgaggtggtctcgccgctctccgagcgcgtgctgggccgggtc
tcggccgacgacgtgctcaagccgggcaccgacgaggttctggtcgcggcaggcgagctg
atcgacgagcgcaaggccgatctggtcgagcagtcggcggtgcagaagatgcgcatccgc
agcccgctcacctgcgaggccgaagacggcgtctgcgccatgtgctacgggcgtgacctc
gcgcgcggcacgatggtgaaccagggcgaggccgtgggcatcatcgcggcgcagtcgatc
ggcgagccgggcacccagctgacgatgcggaccttccacatcggcggcgtggcccagggc
ggtcagcagtccttcctcgaggccagccagtcgggcaaggtcgagttccgcaacgccaac
ctcctcgagaacgcggcgggcgagcagatcgtcatgggccggaacatggtcatcgcgatc
atgggcgaggacggcgaggagcgcgcgagccacaagatcggctacggcaccaaggtcttc
ctcaaggaaggccaggatgtgaagcgcggcgagaagatgttcgagtgggacccctacacc
ctgccgatcatcgccgagaaggccggtaccgtgcgcttcgtcgacctcgtcaacggcatc
gccgtgcgcgaggacaccgacgatgcgaccggcatgactcagcggatcgtcacggactgg
cgttcggtgcccaagggcaacgagctcaagcccgagatcatcgtggtgggcgaggatggc
gaaccggtccgcaccgacagcggcaacccggtgacctacccgatgtcggtggacgcgatc
ctgtcggtcgaggacggccagcagatccaggccggcgacgtggtggcgcggatcccgcgc
gagggcgccaagaccaaggacatcaccgggggtcttccccgcgtggcggaactgttcgag
gcccgtcgtcccaaggaccacgcgatcatcgccgagatcgacggctatgtgcgcttcggc
aaggactacaagaacaagcgccgcatcgcgatcgagccgtcggaagagggccgcgagaag
gtcgagtacatggtgcccaagggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggtgactacatcatggacggcaacccggcgccgcacgacatccttgccatcatgggc
gtcgaggccctagccgagtacatgatcgccgaggtgcaggacgtctatcgactgcagggc
gtgaagatcaacgacaagcacattgaggtgatcgttcgccagatgctgcagaagatcgag
atctcggactcgggcgagagcacgcttctcaagggcgagcatgtcgacaaggcggagttc
gacgaggccaacgaaaaggcgatcgccaagggcggtcgtccggcgcagggcagccccgtg
ctgctcggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcctcgttc
caggagaccacccgcgtgctcaccgaggcttcggtccagggcaagcgcgacaagctggtc
ggtctcaaggagaacgtcatcgtcggccgcctgatcccggccggcaccggcggtgcgacc
tcgcgcgtgcgcaagatcgcgcatgaccgcgaccactcggtgatcgagcagaagcgcgag
gcggccgagcaggccgcggcgctggccgccccgtccgagcagccgatgtcggacgaccag
ttcgacacgatctcggcgcgcgccgaggacagccgcgactga
DBGET
integrated database retrieval system
