Limimaricola variabilis: T8T21_12520
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Entry
T8T21_12520 CDS
T09625
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T8T21_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvr03021
]
T8T21_12520
03400 DNA repair and recombination proteins [BR:
lvr03400
]
T8T21_12520
Enzymes [BR:
lvr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T8T21_12520
Transcription machinery [BR:
lvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T8T21_12520
DNA repair and recombination proteins [BR:
lvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T8T21_12520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
WPY93928
LinkDB
All DBs
Position
2502322..2503338
Genome browser
AA seq
338 aa
AA seq
DB search
MIHKNWAELIKPTQLDVKPGNDPARQATVVAEPLERGFGLTLGNALRRVLMSSLQGAAIT
SVQIDNVLHEFSSISGVREDVTDVVLNLKGVAIRMEVEGPKRLSVQATGPGVVTAGDISE
SAGIEILNKDHVICHLDDGANLYMELTVNTGKGYVAADRNKPEDAPIGMIAIDAIYSPVK
KVSYDVQPTREGQVLDYDKLTMKVETDGSLTPDDAVAYAARILQDQLSIFVNFDEPESAS
AGALDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLSGMGLHLGMDVEDWPPDNIEDLAKKFEDQF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatccacaagaattgggccgagctgatcaagccgacgcagctcgacgtcaagccgggc
aacgatccggcgcggcaggccaccgtggtcgccgagccgctcgagcgcggcttcggcctg
acgctgggcaacgcgctgcgccgcgtgctgatgtcgtcgctccaaggtgcggccatcacc
tccgtccagatcgacaacgtgctgcacgagttctcctcgatctcgggcgtccgtgaagac
gtgaccgacgtggtgctgaacctcaagggcgtcgcgatccgcatggaagtcgagggcccg
aagcggctttccgtccaggcgaccggccccggcgtcgtcaccgccggtgacatctccgag
agcgcgggcatcgagatcctcaacaaggatcacgtgatctgccacctcgacgatggcgcc
aacctctacatggagctgaccgtcaacaccggtaagggctatgtcgcggccgaccgcaac
aagcccgaggacgcgccgatcggcatgatcgccatcgacgcgatctactcgccggtcaag
aaggtgtcctacgacgtgcagccgacccgtgagggtcaggtgctcgactatgacaagctg
accatgaaggtcgagaccgacggttcgctgaccccggacgacgccgtggcctatgccgcg
cgcatcctgcaggaccagctgtcgatcttcgtgaacttcgacgagccggaatcggcctcg
gccggcgcgctcgacgatggtctcgagttcaacccgctgctgctgaagaaggtcgacgag
ctcgagctgtcggtgcgttcggcgaactgcctgaagaacgacaacatcgtctatatcggc
gacctgatccagaagaccgaagccgagatgctccgcaccccgaacttcggccgcaagtcg
ctcaacgagatcaaggaagtgctctcgggcatgggcctgcatctcggcatggacgtcgag
gactggccgccggacaacatcgaagacctggccaagaagttcgaagaccagttctga
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