Yoonia vestfoldensis: LOKVESSMR4R_00229
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Entry
LOKVESSMR4R_00229 CDS
T04854
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lvs
Yoonia vestfoldensis
Pathway
lvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOKVESSMR4R_00229 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvs03021
]
LOKVESSMR4R_00229 (rpoC)
03400 DNA repair and recombination proteins [BR:
lvs03400
]
LOKVESSMR4R_00229 (rpoC)
Enzymes [BR:
lvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOKVESSMR4R_00229 (rpoC)
Transcription machinery [BR:
lvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOKVESSMR4R_00229 (rpoC)
DNA repair and recombination proteins [BR:
lvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOKVESSMR4R_00229 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
RPOC_hybrid
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
ART99570
UniProt:
A0A1Y0E882
LinkDB
All DBs
Position
228703..232941
Genome browser
AA seq
1412 aa
AA seq
DB search
MNQELTNNPFNPVAPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLLTEEEFNDAQDLYGMDAFQ
ANIGAEAIREMLAQIDLESEAEQLRADLKVATGELKPKKIIKRLKIVENFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIMREGMKGEGMSFSNIDEVEHAL
AAREVHLHAKITARMIQIDDEGNEVLERFETTPGRLRLGALLPLNAKAPFALVNRLLRKK
EVQQIIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVVPDTKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKANDKVTEAMMTTISTAGRDADGSESEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRQVDCGTDRAITAEAAVNDGEVVSSLAERVLGRV
SADDVLKPGTDEVIVHAGELIDERKADMIDAAAIGKMRIRSPLTCEAEDGVCAMCYGRDL
ARGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQPGKVTFRNAM
LLENAAGENVVMGRNMVIAIVGPEGEDRATHKVGYGSKVLVKEGQEILRGDKIFEWDPYT
LPIIAEKSGTAKYVDLINGIAMREDTDDATGMTQRIVSDWRAAPKGNELAPKIIVVGADG
EVVLKDDGNPVSYGMSVDAVLSVEDGQEVKAGDVIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESADDPDLKVEYMVPKGKHIPVVEGDFVQ
KGDYIMDGNPAPHDILAVMGVEALAVYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGDTVLLKGETVDKAEFDEANAKALKRGDRPATGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLIGLKENVIVGRLIPAGTGGATQQMRKIAADRDNVVIEARRE
EAEQAAALVAPVRNEETDVFGARSEASDDNDA
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaacccggttgccccggcgaagacgtttgac
gaaatcaaggtgtctctggcatcgcccgaacggatcctgtcgtggtcctttggcgagatc
aagaagcccgagaccatcaactaccgcacgttcaagcctgaacgggacggtctgttctgc
gcgcggatctttggcccgatcaaggattacgaatgcctctgcggcaaatacaagcgcatg
aaatatcgcggcgtcgtctgcgaaaaatgcggcgtggaagtgaccctgcaaaaggtccgc
cgcgaacgcatgggccatatcgaactggccgcacctgttgcgcatatctggttcctgaaa
tcgctgccaagccgcatcggcctgatgctggatatgacgttgcgcgatctggaacggatt
ctgtatttcgaaaactacgtcgtgatcgaacccggcctgacggacctgacctatggccag
ctgctgaccgaggaagaattcaacgacgcgcaggacctttatggcatggacgcgtttcag
gccaatatcggcgccgaagcgatccgcgaaatgctggcccagatcgatctggaatccgag
gctgaacagctgcgcgccgatctgaaagtggcgacaggtgaactcaagcccaagaagatc
atcaagcgcctgaagatcgtcgagaacttccttgaatctggcaatcgcccggaatggatg
gttctgaccgtgatccccgtgatcccgccggaactgcgcccgctggtcccgctggatggc
ggccgttttgcgacctctgacctgaacgatctttatcgtcgtgtcatcaaccgcaacaac
cgcctgaagcgcctgatcgaactgcgcgcgcctgatatcattgtgcgcaacgaaaagcgc
atgctgcaggaatccgtcgatgctttgttcgacaacggccgtcgtggccgcgtgatcacg
ggtgccaacaagcgtccgctgaaatcgctgtccgatatgctcaagggcaagcagggtcgt
ttccgccagaaccttttgggcaagcgcgtcgacttttcgggccgttcggtcatcgtgacc
gggccagagctgaagctgcaccaatgcgggttgcccaagaagatggcgctcgaattgttc
aaaccgttcatctattcgcggctggaggccaaaggcctgtccagcaccgtgaaacaggcc
aagaaactggtcgaaaaagaacggccagaggtttgggatatcctggatgaagtcatccgc
gaacatcccgtcatgctgaaccgggcgcccacgctgcaccgtctgggcattcaggcgttc
gaaccggtcctgattgaaggcaaggcgatccagctgcacccgctggtctgtactgctttc
aacgccgactttgacggcgaccagatggctgtgcatgtgcccctgagtctcgaggcgcag
ctggaagcccgcgtgctgatgatgtccacgaataacgtgttgtcgcctgccaacggcgcg
ccgatcatcgtgccatcgcaggatatgatccttggcctttattacacgaccatcatgcgc
gaaggcatgaagggcgaaggcatgtcgttcagcaatatcgacgaggttgaacatgcgctt
gctgcgcgtgaagtgcatctgcacgccaagatcaccgcgcggatgatccagatcgacgac
gaaggcaacgaagtgctggaacggttcgagacaacaccgggccgtctgcgtctgggtgcc
ttgttgccgctgaacgccaaggcgcctttcgcgctggtcaaccgcctgttgcgcaagaaa
gaggtgcagcagatcatcgacaccgtctaccgctattgcggccagaaggaatcggtcatc
ttctgcgaccagatcatgaccatgggcttccgcgaggcgttcaaggcgggcatttccttc
ggcaaggacgacatggtcgtgccggataccaaatggacgctggtcgatgaaacccgcgat
caggtcaaggatttcgaacagcagtacatggacggtctgatcacccagggtgaaaagtac
aacaaggtcgtcgatgcctggtcgaaagccaacgataaggtcaccgaggcgatgatgacc
accatttccaccgccggccgtgatgccgatggatcggaaagcgagccgaactcggtctat
atgatggcccattccggtgcgcgtggctcggtcacgcagatgaaacagctgggcgggatg
cgcggcctgatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatatttcaactcgacccacggtgcccgcaagggtctg
tcggataccgcgttgaagacagcgaactcggggtatctgacgcgtcgtctggtggatgtc
gcacaggattgcatcgtccgtcaggtcgattgcggcactgaccgtgcgatcaccgccgaa
gcggccgtgaatgacggtgaggtcgtgtcctcgctggccgaacgtgtgctgggccgtgtg
tccgccgatgacgtgctgaagcccggcaccgacgaggtgatcgtccacgcaggcgagctg
atcgacgaacgcaaggccgatatgatcgacgccgctgccatcggcaagatgcgcatccgt
agcccgctgacctgcgaggccgaggatggcgtttgtgccatgtgctatggccgtgatctg
gcgcgcggtacccgcgtgaacatcggtgaagcggtcggcatcatcgccgcccagtccatc
ggtgaacccggcacccagctgacgatgcggaccttccacatcggcggcgtcgcacagggt
gggcagcagtccttcctcgaagcatcgcagcccggcaaggttactttccgcaatgccatg
ttgctggaaaatgccgctggtgaaaacgtcgtcatgggccggaacatggtcatcgcgatc
gttggacccgaaggcgaggatcgcgcgacccataaggtcggttacggttccaaagtcttg
gtcaaggaaggccaagagatcctgcgcggcgacaagatctttgaatgggatccttatacc
ctgccgatcatcgctgaaaaatcgggaacggcgaaatatgtcgatctgatcaacgggatc
gccatgcgcgaagacaccgatgatgcaacgggcatgacccagcgcatcgtgtccgactgg
cgcgctgcccccaagggcaacgagctggcgccgaagatcatcgtcgtcggtgcggatggt
gaagtcgtgctcaaggatgacggcaaccccgtatcctatggcatgtcggttgatgccgtc
ctgtccgtcgaagacggccaagaggtaaaagccggtgacgtgatcgcccgtatcccgcgc
gaaggtgccaagaccaaggacatcaccggtggtctgccgcgtgtggccgaattgttcgaa
gcccgtcgtcccaaggatcacgcgatcatcgccgaaatcgacggctatgtgcgctttggc
aaggactacaagaacaagcgccgcatcgcgattgaaagcgccgatgatccggatctgaag
gtcgaatacatggtgcccaagggcaagcacattcccgtcgtggaaggtgactttgtccag
aagggtgattacatcatggatggcaacccagccccgcatgatattcttgcggtcatgggg
gtcgaggccctggcagtctatatgatcgacgaagtgcaggacgtgtatcgtctgcagggc
gtcaagatcaacgacaagcacatcgaagtcatcgtgcgccagatgctgcagaaatgggaa
atccaggacagcggcgatacggttctgctgaaaggcgaaaccgtggataaggctgaattc
gacgaagccaatgccaaggcgctcaagcgcggcgaccgtccggcaacgggcgagccgatc
ctgctgggcatcaccaaggcatccttgcagacacggtccttcatctcggcggcctcgttc
caggaaaccacgcgcgtgctgaccgaagcatcggtgcagggcaagcgggacaagctgatc
ggcctgaaggaaaacgtcatcgtcggccgtctgatcccggcaggcacaggcggggcgacc
cagcagatgcgcaagatcgccgccgaccgcgacaatgtcgtgatcgaggcgcgccgcgaa
gaggccgaacaggccgcagcgctggtcgcaccggtgcgcaacgaggaaaccgatgttttc
ggtgcccgcagcgaagcgtccgacgacaacgacgcataa
DBGET
integrated database retrieval system
