Yoonia vestfoldensis: LOKVESSMR4R_01334
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Entry
LOKVESSMR4R_01334 CDS
T04854
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lvs
Yoonia vestfoldensis
Pathway
lvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKVESSMR4R_01334 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvs03019
]
LOKVESSMR4R_01334 (rne)
03009 Ribosome biogenesis [BR:
lvs03009
]
LOKVESSMR4R_01334 (rne)
Enzymes [BR:
lvs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LOKVESSMR4R_01334 (rne)
Messenger RNA biogenesis [BR:
lvs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOKVESSMR4R_01334 (rne)
Ribosome biogenesis [BR:
lvs03009
]
Prokaryotic type
rRNA processing factors
LOKVESSMR4R_01334 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ARU00655
UniProt:
A0A1Y0EAK8
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All DBs
Position
1352139..1354745
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AA seq
868 aa
AA seq
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MPKKMLIDATHAEETRVVVVDGNKVEEFDFESQFKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPIADREALMEEERAYAESLKAEEEAEDAPKQPRRRTRSK
VRAAAVDSADAVVTSGDDPAGLETIDLAEDLEGSSPMELVGETPVETPAADDDSDEAAPD
ETIESVADADDIDDMRPVRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSL
AGRYCVLMPNTARGGGISRKITNAVDRKKLKEIAGEMTVPDGAGLIIRTAGSQRTKAEIK
RDYEYLQRMWEQIRALTLQSIAPAKIYEEGDLIKRSIRDLYSKDIDEVIVAGEAGYRSAK
DFMRMIMPSHAKNVKFYAEPMPIYARYQVETYLAGMFNPTVQLPSGGYIVIGITEALVAI
DVNSGRATKEGSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKR
FKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLEATTQMCPHCHGTGLLRSDDNVALS
ILRQLEEEGVRARSKEVLVRAPIAIANFLMNGKRENIAEIEARYGMSVRIECDPTLISPD
FVVEKFKTATRIVPEAAPIVANALLMEEDDDDDLIPETPDEDEEASAAASPAPEADGEDR
PKRKRRRRRRRRGAGDAAQADGTETPETGEEAAADDAPGASEPAPEAAPEDKPKRRRTRA
RKAADHAPEQPADAAAAPEAPLAQDAPAPAEVTAEEAAPKKRTRSRKKPSVVQETAAEPA
AAAESAAEPAADAAPEEAPAKPKRRSRAKPKPAEAEAAAEPVKEAPVAATPEPAATPEPA
PAPQPEPEPAAAPAAEKPRRKGWWSLGK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaaaatgcttatcgatgccacccatgcggaagaaacccgcgtcgtggtggtg
gacggcaacaaggtcgaagaatttgattttgaaagccaattcaaacgccagctggcgggc
aatatctaccttgccaaggtaacacgggtcgaaccatcgctacaggccgctttcgtcgat
tacggcggaaaccggcatgggttcctggccttcgcggaaatccatcccgattattaccag
atccccatcgccgaccgcgaggcgctgatggaagaagaacgcgcctatgccgaaagcctc
aaggccgaggaagaggccgaggatgcgcccaaacagccccgccgccgcacccgcagcaag
gtgcgcgcggccgcggtagacagcgccgatgcggtcgtgacctcgggcgatgatccggca
ggtctggaaaccatcgatctggccgaggatcttgaaggcagctcgccgatggaattggtc
ggtgaaacgccggtcgaaacccccgccgccgatgatgacagcgatgaggccgcgcccgat
gagaccatcgaaagcgtcgctgatgccgatgatatcgacgacatgcgcccggtgcgcaaa
ccgcgcccgcgtcgctataagatccaagaggtcatcaaggtccgccagatcctgctgatc
caggtggtcaaggaagaacgcggcaacaagggtgcggcgctgacgacctatctgtcgctg
gcaggccgctattgcgtcttgatgcccaataccgcgcgcggcggcgggatttcgcgcaag
atcaccaatgccgtggaccgcaagaagctgaaagaaatcgccggcgaaatgaccgtgccc
gatggcgcggggctgatcatccgcaccgccggatcgcagcgcaccaaggcggaaatcaag
cgcgattacgaatatctgcaacggatgtgggaacagatccgcgccttgacgctgcaatcc
atcgcgcctgcgaaaatctacgaagaaggcgatttgatcaaacgctcgatccgcgacctg
tattccaaggatatcgacgaggtgatcgtcgcgggcgaggcgggctatcgctcggccaag
gatttcatgcggatgatcatgccgtcgcatgcgaaaaacgtgaaattctacgccgaaccg
atgccgatctatgcgcgctatcaggtggaaacctatcttgcgggcatgttcaatcccacg
gtgcagctgccctcgggcggctatatcgtgatcggcatcaccgaggcgctggtcgccatc
gacgtgaactctggccgcgcgaccaaggaaggctcgatcgaacagaccgcgctgaaaacc
aatctcgaagccgccgatgaggtcgcgcgccagctgcgcctgcgcgatctggccggtctg
atcgtgatcgatttcatcgacatggacgaacgcaagaataacgccgccgtcgaaaaacgc
ttcaaggacaagctgaaaaccgaccgcgcgcggattcaggtgggccggatttccggtttc
ggcctgatggaaatgtcgcgccagcgcctgcgccccggcatgctcgaggccacgacacag
atgtgcccgcattgccatggcacgggcctgctgcggtccgacgacaatgtcgcgctgtcg
atcctgcgccagctcgaagaagaaggcgtgcgcgcgcgctccaaagaggtgctggtccgc
gcccccatcgcgattgccaatttcctgatgaacggcaagcgcgaaaacatcgccgagatc
gaggcgcgctatggcatgtcggtgcggatcgaatgtgacccgacgctgatctcgcccgat
ttcgtggtggaaaagttcaagactgcgacccgcatcgtccccgaagccgcccccatcgtc
gccaatgcgctgctgatggaagaggatgatgatgacgatctgatccccgaaacccccgat
gaagacgaagaggccagcgccgctgcgtccccagcgcccgaggcggatggcgaagaccgg
cccaagcgcaagcgccgtcgtcgtcggcggcggcggggtgcgggtgatgccgcacaggcc
gatggcacagagacgcccgagaccggcgaagaggccgcggctgacgacgcccccggcgca
tccgaacccgcgcccgaagcggcccccgaggacaagcccaagcgccgccgcacgcgcgcc
cgcaaagcggcggatcatgcgcccgaacagcctgccgatgccgcagcagcacccgaggca
ccgctggcccaagacgcgcccgcgcccgcagaggtcaccgccgaagaggccgcgcccaag
aaacggacccgcagccgcaaaaagccgagcgtcgtgcaagagactgccgccgaacccgca
gccgcagccgaatctgccgccgaacccgctgccgatgccgcgcccgaagaggcccccgcc
aagcccaagcggcgcagccgcgccaagccgaaaccggccgaggcagaggccgcagcagag
ccagtcaaagaggcgcctgtcgcggccacaccagaaccggcagcgacgccggaaccagcc
cctgcgccgcagccagagccggaaccggccgcagcgcccgccgccgaaaaaccgcgccgc
aaaggctggtggtcgctcggtaagtaa
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