Yoonia vestfoldensis: LOKVESSMR4R_01485
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Entry
LOKVESSMR4R_01485 CDS
T04854
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lvs
Yoonia vestfoldensis
Pathway
lvs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOKVESSMR4R_01485 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvs03400
]
LOKVESSMR4R_01485 (mfd)
Enzymes [BR:
lvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOKVESSMR4R_01485 (mfd)
DNA repair and recombination proteins [BR:
lvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOKVESSMR4R_01485 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
UB2H
AAA_16
Cas3-like_C_2
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARU00801
UniProt:
A0A1Y0EBP9
LinkDB
All DBs
Position
1493296..1496742
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AA seq
1148 aa
AA seq
DB search
MSERTHITVSGAPEGFDAQLILAELAKGQPVCHVARDDKRLAALQSALAFFAPAVPVFVF
PAWDCLPYDRVSPNTDISAARMATLAALVHGMPGQFILLTTLSAATQRVPARATLREAAF
TATVGKRLDEAALRAFLVRMGFTQSPNVMEPGDYAVRGGIIDIFPPGQSGPVRLDLFGDV
LDAARRFDPASQRTVEKLTEVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHAGVEHWLGFFQDDLETLFDYLPRATITLDDQIGPQRIARWDSIADQYGTRMHAL
TQKGRMDSVYKPAPPQLLYLDDAAWARAVADRRVLQFSPHKQATGPGVIDAGGRMGRSFA
PERQQENLSLFGALAAHIKARSANGPVIIASYSEGARERLEGLIEDEGVGETIAITDFSR
VGKTGVYLAVWPLDQGFESPGLSVISEQDVLGDRLIRQTKRKRRAENFLSEANSLSPGDL
VVHVDHGVGRFMGMEVVTALGAAHECLLIEYAEETKLYLPVENIELLSKYGHEAGLLDKL
GGGAWQAKKARLKERIRQIAERLIRVAAERALRKAPVLEPESGLWDQFLARFPYAETDDQ
LSAIDDVLTDLGSGQPMDRLICGDVGFGKTEVAIRAAFVAAMAGVQVAIIAPTTLLARQH
YQSFAERFRGFPVNVRPLSRFVSPRDAALTRDGINKGSVDIVIGTHALLAKGVNFQNLGL
LIIDEEQKFGVQHKERLKQLRTDVHVLTLTATPIPRTLQLSLSGVRDLSVIGTPPIDRLA
IRTYVSEFDTITVREALLREHYRGGQSFIVVPRISDMDEMEAFLRDEVPEVSFISATGQM
AAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVWRADMFGLSQLYQIRGRVGR
SKTRAYAYLTTKPRQKLTDTAQKRLRVLGSIDSLGAGFTLASQDLDIRGAGNLLGEEQSG
QMREVGYELYQQMLEDQITAIRSGAAEGIIDDGQWAPQINLGVPVLIPEDYVPDLDVRLG
LYRRLSNLTTKVELEGFAAELIDRFGALPREVNTLLLVVRIKAMCKKAGISQLDAGPKGA
TIRFHNDKFASPAGLVDFINDQRGQAKVKDNRIVVLRDWTKERDKIQGAFNIARDLAGKL
AEETKKAG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcgcacccatatcaccgtcagcggcgcgcccgaagggtttgacgcgcaattg
atcctcgcggaattggccaagggccagcccgtttgccatgtcgcgcgcgatgacaaaagg
ctggcggcgctgcaatcggcgctggctttctttgcgcctgccgtgccggttttcgtgttt
ccggcctgggattgtctgccctatgaccgcgtgtcacccaataccgatatttccgccgcg
cggatggccacattggccgcccttgtccacgggatgcccggccagttcatcctgctgaca
acgctgtcagccgccacccagcgcgtgcctgcgcgcgccacattgcgcgaggccgctttc
accgccaccgtcggcaaaaggctggacgaagccgccttgcgcgcctttctggtgcggatg
ggattcacgcaaagccccaatgtgatggaaccgggcgattacgccgtgcgcggcgggatc
atcgacattttcccacccggccaatccggccctgtgcggctggacctgttcggcgatgtg
ctggatgccgcgcgccggtttgaccctgccagccagcgcaccgttgaaaaactgaccgag
gtggaattggcgcccgtgtccgaggtgatccttgacgaggcggcgatcacccggttccgg
cagaattaccggatcgaatttggcgcagccggcaccgatgacccgctttacgaggcggta
agcgcggggcgcaaacatgccggtgtcgaacattggctgggcttctttcaggacgatctg
gaaacactgttcgattatctgccccgcgccacgatcacgctggacgaccagatcgggccg
cagcggattgcgcgctgggacagcatcgccgaccaatacggcacgcggatgcatgcgcta
acgcaaaaggggcggatggattcggtctataaaccggccccgccgcagctgttatatctt
gacgatgcggcatgggcgcgggctgtggccgaccgccgtgtgctgcaattctcgccgcat
aaacaggcgaccggccccggtgtgatcgacgcaggcgggcgcatggggcgcagtttcgcg
cctgagcggcaacaggaaaacctaagccttttcggcgctttggccgcccatatcaaggcg
cgcagcgccaatggcccggtgatcatcgcctcttattccgaaggcgcgcgcgaaaggctg
gaaggcttgatcgaagatgaaggtgtgggcgagacgattgccatcaccgatttctctcgt
gtgggcaaaaccggtgtctatctggcggtctggcccttggatcaggggtttgaatccccc
ggcctgagtgtgatttccgaacaggacgtgctgggcgataggctgatccgccagaccaag
cgcaaacgccgcgccgaaaactttctgtccgaggccaatagcctgtcgcccggtgatctg
gtggtccatgtcgatcacggcgtcgggcgcttcatggggatggaggtcgtcaccgccctg
ggggcggcgcatgaatgcctgctgatcgaatatgccgaagaaacaaagctttatctgccg
gtcgagaatatcgaactgctgtcgaaatacggccatgaggccggtttgctggacaagctg
ggcggcggtgcctggcaggcgaaaaaggcgcggctgaaagaacgcatccgccagatcgcc
gaacggctgatccgtgtcgccgccgaacgtgccctgcgcaaagcccccgtgctggaaccg
gaatcagggctatgggatcaattcctcgcccgctttccctatgccgaaaccgatgaccag
ttgtccgccatcgatgatgtgctcactgatctggggtccggccagccgatggataggctg
atctgcggcgatgtgggctttggcaagaccgaggtggcgatccgcgctgcctttgttgcg
gcgatggcgggggtgcaggtggcgatcatcgcgccaacaaccttgctggcgcggcaacat
taccaaagctttgccgaaaggttccgtggctttcccgtgaacgtgcggcccttgtcgcgg
ttcgtgtcaccgcgcgatgcggcgctgacccgcgacggcatcaacaaaggcagcgttgat
atcgtcatcggcacccatgcgctgctggccaagggggtgaatttccagaaccttggcctg
ttgatcatcgacgaggaacaaaaattcggcgtccagcacaaggaacggctgaaacaattg
cgcaccgatgtgcatgtgctgaccctgaccgccacgccgattccgcgcactttgcaattg
tcgctgtcgggcgtgcgcgatctgtcggtgatcggcacgccgcccatcgaccgtctggcg
atccgcacctatgtcagcgaatttgatacgatcaccgtgcgcgaggcgcttttgcgcgaa
cattatcgcggcgggcaaagtttcatcgtcgtcccccgcatcagcgatatggacgagatg
gaggcgtttttgcgcgatgaagtccccgaggtcagctttatcagtgccacgggccagatg
gcggcgggcgaactcgacgaccggatgaatgccttttacgacggcaaatatgacgtacta
ctggcgacaaccatcgtggaatcggggctggatattcccaccgcgaatacgatgatcgtc
tggcgcgcggatatgttcgggctgtcgcaattgtatcagatccggggcagggtgggtcgg
tccaagacccgcgcctatgcctatctgaccaccaaaccgcgccaaaaactgaccgatact
gcgcagaaacgcctgcgggtgctggggtctatcgacagtctgggggcagggtttacgctg
gcgtcccaagaccttgatattcgcggtgcgggcaacctgctgggcgaggaacaatccggc
cagatgcgcgaagtgggctatgagctgtatcagcagatgctggaagaccagatcactgcg
atccggtcaggcgctgccgaaggcatcattgatgatggccaatgggcgccgcagatcaat
ctgggcgtgccggtcttgatccccgaagattacgtccccgatctggatgtgcgcctgggg
ctttaccgccgcctgtcgaacctgaccaccaaggtggaactggaaggtttcgccgccgag
ctgatcgaccgtttcggtgcgctgccgcgcgaggtcaacacgctgctattggtcgtgcgg
atcaaggcgatgtgcaaaaaggccggtatcagccagctggatgcggggcccaagggggcc
acgatccggtttcacaatgacaaattcgcctcgcctgcggggctggtggatttcatcaat
gaccagcgcggacaggccaaggtcaaggacaaccgcatcgtcgtgctgcgcgattggacc
aaggaacgcgacaagatccagggtgcgttcaatatcgcgcgggacctggcgggaaagctt
gccgaagaaacgaaaaaagcagggtaa
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