Yoonia vestfoldensis: LOKVESSMR4R_02722
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Entry
LOKVESSMR4R_02722 CDS
T04854
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lvs
Yoonia vestfoldensis
Pathway
lvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKVESSMR4R_02722 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvs03019
]
LOKVESSMR4R_02722 (rhlE)
Enzymes [BR:
lvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOKVESSMR4R_02722 (rhlE)
Messenger RNA biogenesis [BR:
lvs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOKVESSMR4R_02722 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
Motif
Other DBs
NCBI-ProteinID:
ARU02016
UniProt:
A0A1Y0EEF0
LinkDB
All DBs
Position
complement(2703867..2705207)
Genome browser
AA seq
446 aa
AA seq
DB search
MDFDMLGLAPRLIAVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI
HALMKAGVKPNPKAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKR
LAGGVDLLVATPGRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDR
QTMMFSATMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVELLD
KHRDELALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRVLVA
TDVAARGIDIPGVRHVYNYDLPNVAENYVHRIGRTARAGAEGSAIALVAPDEMIELQDIE
KAMKEAIPVASGRPWEIMPGQKKRPNGGGGGGRRGGGGGGGGGGGGNRSAAPRAGGKPGG
FSGKPQGGRRQGAGGGAGRSRGKSAA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggattttgacatgctgggccttgcgccccgattgattgccgttctcaaggaacagggc
atcaccgacccaaccccgatccagacgcaggcgatcccgcatgcgatgaacggccgcgac
gtgatggggctggcccagaccggcaccggcaaaaccgcggcctttggcctgccgatgatc
catgcgctgatgaaggcgggtgtaaaacccaaccccaaagccgtgcgcggcctggtgctg
gccccaacgcgcgagctggccaaacagatcgccgacaacctgaccgcctataccaagggc
agccatctgaaggttgctttggtcgtcggcggggcgggtatcgtggcgcagaccaaacgt
ctggcaggtggcgttgacctgctggtcgccacgcctgggcggttgatcgacctgcttgac
cgccgcgcggtgcggctggacgaaacaatctatctggtgctggacgaggcagatcagatg
ctggacatgggcttcatccatgcgctgcgccggatcgccccgctcttggccaaggaccgt
cagacgatgatgttctcggcgaccatgccaaaactgatgtcggaactggcggatgcgttt
ttgaccgatgcggtgcgcgtgcaggtcaacccccccggccaggccgtcaagaaaatcgcc
caatcggtgcatttcgtggcacaggcggcgaaaaccgacctgctggtggaattgctggac
aagcatcgcgacgaattggcgctggtctttgggcgcaccaaacatggctgcgagaagctt
tacaaaacgctggaagccaagggtttcgcggcggcctctatccacggcaataaatcccaa
ggccagcgcgaacgcgcgatcgaggccttcaaggccggcaaggttcgcgtgctggtggca
accgatgtcgccgcccgcggcatcgatattccgggcgtgcggcatgtctataattatgac
ctgcccaatgtggcggaaaactatgtccaccgcattggccgcacggcgcgcgcgggtgcc
gaaggctcggccatcgctttggtcgcccccgatgagatgatcgaattgcaagatatcgaa
aaagcgatgaaagaagcgatccccgtcgcatcgggccgtccatgggaaatcatgcccggc
cagaaaaagcgccccaatggtggcggtggtggcggccgtcgcggtggcggcggcggtggt
ggcggtggcggcggcggtaatcgctctgccgcaccgcgggcgggtggcaagcctggtggt
ttttctggcaagccccaaggcggtcgcaggcaaggtgccggcggtggcgctggccggtcg
cgcggcaaatccgcagcctaa
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