Yoonia vestfoldensis: LOKVESSMR4R_03593
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Entry
LOKVESSMR4R_03593 CDS
T04854
Name
(GenBank) PD-(D/E)XK nuclease superfamily protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lvs
Yoonia vestfoldensis
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvs03400
]
LOKVESSMR4R_03593
Enzymes [BR:
lvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOKVESSMR4R_03593
DNA repair and recombination proteins [BR:
lvs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LOKVESSMR4R_03593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
AvrRpt-cleavage
DUF6074
Motif
Other DBs
NCBI-ProteinID:
ARU02862
UniProt:
A0A1Y0EHU6
LinkDB
All DBs
Position
complement(3560532..3563456)
Genome browser
AA seq
974 aa
AA seq
DB search
MFDPTTGPRIFVEPCGVDYAKGLVAGLMARAQDMPPEDFARVEIYVNTARMQRRIRAMFD
AGPALLLPRIRLVTDLARDPISKDLPPAVAPLQRRLELAQLVAQLLESEPDLAPRAALYD
LADSLASLMDEMQGEGVSPDAIAALDVSDQSGHWARAQKFLTIIAQFFDTTSQPDTEARQ
RLVIETLAARWTDAPPDHPVIVAGSTGSRGATALFMQAVAKLPQGAIVLPGYDTDLPAAV
WSAMDDGLTHEDHPQYRFKRLMDLIGFAPDDVARWSDLAPQRPARNRLVSLSLRPAPVTS
QWLQEGPDLGCLIAATEGLTLLEAASPRAEAEAIALRLRQAVQDGITAALISPDRMLTRQ
VTAALDRWDIKPDDSAGTPLQLSPPGRLLRHVADLFGTPLTGEALLTLLKHPLCHSADND
RGDHLRLTHDLELHLRRHGPPFPTAETLLTWAGDCADRQLWAEWVAGLISGHETAGDKHL
TDHLDAHLTLAESFCAGPAMAGAGGLWAAAAGREAQRICTDLRIHAGSGGIMSPRDYDAL
FGKILSGGVVRDRDAGHPQILIWGTLEARVQGADLTILGGMNDGVWPEAPAPDPWLNRMM
RAQAGLLLPERRVGLSAHDYQQAVAGREVWITRAKRSSDAETIPSRWINRLTNLLGGLPD
QNGPEALRLMQARGAAWLAMAAKLSAPSAELPKAQRPAPCPPVAARPDAFSVTQIKILIR
DPYAIYARKVLGLNPLNPLTPSADAPLRGVIIHGILEDFIRQNHAPDDLAALLDIAAQHF
AAKCPWPTNRAQWMARFAQAAIAFCAAEVDRQALSDTRLVEQEGKLLIPGVGVTLTCKAD
RIDLTPEGTAILYDYKTGTMPTKPQQEKFDKQLLLEVAMVENGGFEAVGPVQVADAQFVS
IKPDAKTVPAPMKDSPTDATMAGMIALLQHWQRADSGYTARYALFSKNDSGDYDHLSRFG
EWDTSDPAQPEVLT
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatccaaccaccggcccacgtatctttgtcgaaccttgcggcgtggattacgcc
aagggccttgttgcggggctgatggcgcgtgcgcaagacatgccgcccgaagatttcgcc
cgcgtcgaaatttacgtcaacaccgcccgcatgcagcggcgcatccgcgcgatgtttgat
gcggggcctgcgctgctattgccgcgcatccggctggtgacggatctggcccgcgacccg
atatccaaggacctgccccctgccgtcgcccctttgcagcgccggttggaattggcgcaa
ttggtggcgcaattgctggaaagcgaacccgatctggccccgcgggccgcactttatgat
ctggccgatagtctggccagcctgatggatgaaatgcagggcgaaggcgtcagccccgat
gcgatcgcagcccttgatgtcagcgaccaatccggccattgggcgcgcgcgcagaaattc
ctgaccatcatcgcgcaattctttgacaccaccagccagcccgataccgaggcccgccaa
aggctggtgattgaaacgctggccgcgcgttggacggacgcgccccccgatcatccggtg
atcgtggcggggtccaccgggtcgcgcggggcgaccgcgctgttcatgcaggcggtggcg
aaattgccgcaaggcgcgatcgtgctgccgggttatgacaccgatctgcccgctgctgtc
tggtccgcgatggatgacgggctgactcatgaggatcatccgcaataccggttcaaacgg
ctgatggatctgatcggctttgcccctgatgatgtcgcgcgctggtccgatcttgcgccg
caacgccccgcgcgcaacaggttggtgtcgctgtcgctgcgccctgcgccggtgaccagc
caatggttgcaggaagggccggaccttggctgtctgatcgccgcgaccgaagggctgacc
ctgctggaagccgcatcgccccgcgccgaggcagaggccatcgcgctgcgcctgcgccaa
gccgtgcaggacgggatcaccgccgcgctgatttcgcccgaccggatgctgacacggcag
gtgaccgccgccttggaccggtgggatatcaagcccgatgacagcgcgggcacgcccttg
caattgtcgcctccggggcggttgttgcggcatgtggcggatctgttcggcaccccgctg
acgggcgaggcgttgctgaccctgcttaaacatcccttatgccattccgccgataacgac
cgtggtgatcatctgcgcctgacgcatgatctggaactgcatctgcgccgccatgggcca
cccttccccacagccgagacattgctgacatgggctggcgactgcgcggatcggcagctt
tgggcagaatgggtggcggggctgatctcggggcatgagacagcgggcgacaaacatctg
accgaccatctggacgcgcatctgacgctggcggaatccttttgtgccggtcccgccatg
gccggtgccggtggcctatgggctgcggcggcgggccgcgaggcgcagcgcatctgcacc
gacctgcgcatccatgcggggtctggcggcatcatgtcgccccgcgattacgacgccttg
ttcggcaagatcctgtcaggcggcgtggtgcgcgaccgcgatgccggccatccacagatc
ctgatctggggcacgctcgaggcgcgggtgcagggcgccgatctgaccattctgggcggc
atgaatgacggtgtctggccagaggcccccgcacctgacccgtggctgaaccggatgatg
cgcgcgcaggcggggctactgttgcccgaacgccgtgtgggcctgtccgcgcatgattac
cagcaggccgtggccgggcgcgaggtttggatcacccgcgccaaacgctcgtccgacgct
gaaactatcccgtcacgctggatcaaccggctaacgaacctgttgggcggcttgccagat
cagaacgggccagaagccctgcgcctgatgcaggcgcgcggtgcggcgtggctggcgatg
gctgcaaagctttccgccccttcggccgagctgccgaaagcccaacgccccgcgccctgc
ccgcctgtcgcggcacggcccgatgccttctcggtcacgcagatcaagattctgatccgc
gacccctatgcgatctatgcgcgcaaggtgctggggctgaacccgctcaacccgctgacg
cccagcgcggatgcgccgctgcgcggggtgatcatccacgggatacttgaggatttcatc
agacagaaccatgcccccgatgatctggcggccttgctggatatcgcggcccagcatttc
gccgcaaaatgcccctggcccacgaaccgcgcgcaatggatggcgcggtttgcgcaggcg
gcaatcgccttctgcgcggccgaggtcgaccggcaggcgctgtccgacacacgtctggtc
gagcaggaaggcaagcttttgatccccggcgtcggggtcacgctgacctgcaaggccgac
cggatcgacctgacgccagagggcacggcgatcctttatgattacaagaccggcacgatg
ccgacaaaaccgcagcaggaaaaattcgacaagcaattgctgctagaggtggcgatggtc
gaaaacggcggttttgaagcggtcggtccggtgcaggtcgcggatgcgcaatttgtcagc
ataaaacccgatgcgaaaaccgttcccgccccgatgaaggacagcccgacagatgcaacc
atggcgggcatgatcgcacttttgcaacattggcaacgggctgacagcggatataccgcc
cgttatgcgctattttccaagaatgacagcggcgattatgaccatctgtcccgctttggc
gaatgggataccagcgacccggcccagcccgaggtgctgacatga
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