Leptotrichia wadei: JCM16777_0975
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Entry
JCM16777_0975 CDS
T06741
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lwd
Leptotrichia wadei
Pathway
lwd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lwd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM16777_0975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lwd03019
]
JCM16777_0975
03009 Ribosome biogenesis [BR:
lwd03009
]
JCM16777_0975
Enzymes [BR:
lwd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JCM16777_0975
Messenger RNA biogenesis [BR:
lwd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JCM16777_0975
Ribosome biogenesis [BR:
lwd03009
]
Prokaryotic type
rRNA helicases
JCM16777_0975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_RecD
Cas3-like_C_2
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BBM42725
UniProt:
A0A7U6QYY5
LinkDB
All DBs
Position
complement(1024179..1025891)
Genome browser
AA seq
570 aa
AA seq
DB search
MQKFEDFGLSIEMLNALSKKGFEEPSEIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIP
ILETIEADKTVRALILAPTRELANQVADEIYSLKGEKNLKVLAVYGGASIENQIKKLKSG
VDIVVGTPGRVMDLMRKKILKVDQLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKMLF
FSATIPKAIMAIAKKFMPEHKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQD
FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGVAITFVTPREASKLAQIKRITK
TEIKREHIPNVEEILEAKKEALLAYVDEIIMENDFDAYSELAQRLMDGRDAKQVLASVLR
HVYEDEFLPENYNEITDVKVKIDDKTRLFIALGSKDGYNVGRLLDLLNKKAKTPGRKVKD
VKIMDKYSFITVPLQEAEYIMRALNSKKDAKPLVEEATGSRNGGGEKSGKKSDRRRDRKG
RKKSSGKTSGKKSDKSSKGKKDKKTRKVKK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatttgaagattttggattaagtatagagatgcttaatgctttgagtaaaaaa
ggatttgaggaaccaagtgaaatacaaaagctggtaatccctgaattactaaaggaaaga
acacatttaataggacaagcacaaacaggaacaggaaaaactgctgcatttggtattcca
attttggaaacaattgaagcggataaaacagttagagctttaattttagcaccaacaaga
gaacttgccaatcaagtcgctgatgaaatttattcattgaaaggggaaaagaatttaaag
gttcttgcagtttatggtggagcttctattgaaaaccaaattaaaaaattaaagtctgga
gttgacattgtcgttggaacacctgggcgtgttatggatttaatgagaaagaaaatccta
aaagttgaccaattagactatttcgtattggatgaagctgatgaaatgcttaatatggga
tttttagaagatattgaagcaattttagaaaaaactaacgatgagaaaaaaatgttattc
ttctcagctacaattcctaaagcaattatggctattgctaaaaaatttatgccagaacat
aaattactaaaagttgcaaaaaaagaacttacaactaatttaactgaacaaatttactat
gaagttaaacaagaagataagtttgaagcactatgcagagttcttgactatgaacaagat
ttttatggaatcgtattttgccgtacaaaatcagaagttgacgatgttacaaataaatta
aaagctagaaattacgatgctgaatgtattcacggagatattactcaagctcttagacaa
aaggctcttgatttattcaagaaaaaaatattaacaatattagttgcgacagatgttgct
gcacgtggaattgatgtaagcaacctgacacatgttataaactactctatcccacaagaa
gctgaatcttacgttcatagaatcggaagaacaggacgtgccggacaaaaaggtgtagca
attactttcgtaactccaagagaagcaagcaaacttgctcaaattaaacgtattacaaag
acagaaatcaaaagagaacatattccaaatgttgaagaaattttagaagctaaaaaagaa
gcactgcttgcttatgtggatgaaattataatggaaaacgactttgacgcatattcagaa
cttgcccaaagacttatggatggaagagatgccaagcaggttctagcctctgtattaaga
cacgtttatgaagatgaattcttgcctgaaaactataatgaaataacagatgtaaaagtt
aaaattgatgataagacaagattatttatcgctcttggaagtaaagacggctacaatgtt
ggaagattacttgatttgttaaacaaaaaagcaaaaactccaggaagaaaagtaaaagat
gtaaaaattatggacaaatactctttcataacagtgccattacaagaagctgaatacata
atgcgagccttaaattctaaaaaagatgcaaaaccacttgttgaagaagctacaggaagc
agaaatggcggtggagaaaaatctggtaaaaaatcagacagaagaagagacagaaaggga
agaaaaaaatcttctggtaaaacttctggtaaaaaatcagataaatcttctaaaggtaaa
aaagataaaaaaacaagaaaagtaaaaaaataa
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