Leptotrichia wadei: JCM16777_1825
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Entry
JCM16777_1825 CDS
T06741
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lwd
Leptotrichia wadei
Pathway
lwd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lwd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM16777_1825 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lwd03021
]
JCM16777_1825 (rho)
03019 Messenger RNA biogenesis [BR:
lwd03019
]
JCM16777_1825 (rho)
Transcription machinery [BR:
lwd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JCM16777_1825 (rho)
Messenger RNA biogenesis [BR:
lwd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JCM16777_1825 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BBM43563
UniProt:
A0A7U6LBV4
LinkDB
All DBs
Position
complement(1953486..1954940)
Genome browser
AA seq
484 aa
AA seq
DB search
MLKKEKEIEAEKMLEEQSETVRPRRGRPRKIEIDKSLENVESTEEKKQKYDEEDSSKKSA
PENSNHEEKMIKDILSENVTKLKKMAKEYKIEGFSGMSKLELINAILIKKGEEKGKTYGF
GKLDVIGDGNYGFLRDTSIGPDVYVSISQIKRFFLRNEDIVFGELRIPIGTEKNYGILKV
LLVNGDLPEKSLERPYFDDLVPSYPDEKLNLGGGEISSRIIDLVSPIGKGQRGLIVSPPK
AGKTMLLSTLANDIIKYNPEIDVWILLIDERPEEVTDIKENVKDAEVYSATFDEDPRVHT
EVTENVLQMAKRQVERGKDILILMDSLTRLARSYNITIPSSGKLISGGIDPNALYYPKRF
LGAARNIKNGGSLTIIATALVETGSRMDEVIFEEFKGTGNMEIILSRTLEQLRIFPAIDV
LKSGTRREELLIPRKNLEKIWKLRRELSEMSEVEGIRNLIELIKKYKNNDELLEDLYKTK
KINK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaaaagaaaaagagattgaagctgaaaaaatgttggaagagcagtctgaaaca
gtaagaccgagaagaggacggccaagaaagattgaaatagataaatcgttagaaaatgta
gaatctactgaagaaaaaaaacaaaagtacgatgaagaagattcaagtaaaaaaagtgcc
cctgagaattcaaatcatgaagagaaaatgataaaggatattctttctgaaaatgtaact
aaattaaaaaaaatggcaaaggaatataaaattgaaggtttttcaggaatgtcaaaactt
gaacttataaatgctattttgataaaaaaaggtgaagaaaaaggaaaaacctatggattt
gggaaactggatgtaataggtgatggaaattatggatttttgagagatacttcaattgga
cctgatgtgtacgtgtcaatttcacaaataaagagattttttttaagaaatgaagatatt
gtatttggagaattaagaattcctattggaacagagaaaaattatggaattttaaaggtt
ttgcttgtaaatggagatttgcctgaaaaatcgctggaacgtccgtattttgatgattta
gtgccatcttatccagatgaaaagttaaatttaggaggtggggaaatttcatctaggatt
atagatcttgtttcacctattgggaaagggcaaagaggacttatagtttcaccaccaaaa
gctggaaaaactatgcttctttcaacacttgcaaatgatattataaaatataatccagaa
attgacgtttggatattgctaattgatgagcgaccagaggaagttacggatattaaggaa
aatgtaaaagatgcggaagtgtattcagctacttttgatgaagatccgagagtgcatacg
gaagttacggaaaatgtgctgcaaatggcaaaaaggcaagtggaacgtggaaaggatatt
ttaattcttatggatagcttgacaaggcttgcacgttcgtataacattactattccatca
agcgggaagttaatttcaggtggaattgatccaaatgctctttattatccaaaaagattt
ttgggagctgcaagaaatataaaaaatggcggaagtttaacaattattgcgacggctctt
gttgaaactggaagtagaatggatgaagtgatttttgaggaatttaaagggacaggaaat
atggaaatcattttaagcagaacacttgagcaattgagaatatttccggcaattgatgta
ttgaaaagtggtacaagacgtgaggagcttttaattccaagaaaaaatttggaaaaaata
tggaaattacgaagagaattaagtgaaatgtctgaagtcgaaggaataagaaatttaatt
gaacttataaaaaaatataaaaataatgatgaattattggaagatttgtataaaacgaaa
aaaataaataaataa
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