Listeria weihenstephanensis: UE46_01275
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Entry
UE46_01275 CDS
T05637
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lwi
Listeria weihenstephanensis
Pathway
lwi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lwi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UE46_01275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lwi03400
]
UE46_01275
Enzymes [BR:
lwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UE46_01275
DNA repair and recombination proteins [BR:
lwi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UE46_01275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
EH_Signature
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQY49824
UniProt:
A0A1S7FQY8
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All DBs
Position
279514..283056
Genome browser
AA seq
1180 aa
AA seq
DB search
MKGLQQLVYEQKDIRGVIKELEEKGKSQLVTGLSGSSRALFASVIEGGTQRPVIFVTHNL
YHAQKLYDDLSTLVDADRLYLYPADELISSELSISSPELRGQRVEVLQFLLSRKPGIVIV
PVSGMRKILPPVSIWEKYNISLVQGSEIDPEALQSQLVTMGYSRSDMVNTPGEFSVRGGI
IDIYPITEEHPIRMELFDTEVESLRFFDVDSQRSIQSVEEFRLVPATEILLEPAFFPDLV
KRVEKKLAATLKQMAGEKEKQQLVENLEEDLELLRDGQKPDMFFKYIGLCYPDPASLLDY
VPQNSILLFDEFARIQETDERLEKEEAEWQTETLERLETVRDTKMSHNFRALLETDRLSR
VYLSLFQKTPNSVRIAKMTNIVYKQMQQFHGQMSVLKTEMDSWAKNNYAVVILAPSMERA
KKMKQTLEDYEMESVILKDESEVPKFGQTQFVLGSLQNGFELPLAKVVFISETELFNKKQ
QKPKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDIKGVHKDYLLLMYQGE
DKLFIPVEQLELVQKYVGSEGKAPKLNKLGGAEWKRVKTRVQASVQDIADDLIKLYAERE
AERGYGYSPDGEMMREFEDAFPYQATEDQLRSIMEIKKDMERERPMDRLLVGDVGYGKTE
VALRAAFKAMMDGKQVAFLVPTTILAQQHYETMKERFQGFPIEVGLLSRFRTRKQQNETL
KGLKSGHVDIVVGTHRLLSKDVEYHDLGFLVIDEEQRFGVTHKEKIKHIKTKVDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVVEQNNVLIREAIERELARDGQVFFLH
NRVDSILQKADEIKMLVPDARVAVAHGQMSETELESVILSFLEGEYDVLVTTTIIETGVD
IPNVNTLFVQNADHMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLQAIKEF
TELGSGFKIAMRDLSIRGAGNILGSQQHGFIDSVGFDLYSQMLQEAIAARQPKDEHEKIV
PVEIDITVDAYIPEHYIQDGRQKIEMYKRFRTVLDMEDLEELRSDMTDRFGEYPEQVEYL
FTITELKVYAMRVGIESIKQEATKVTIQFSEEGTQNMRGDMVMQVIGEYGRQIGVGMDGQ
QLRITVNVGAKPLQEWLFELKTLTDKLSEAKKEIAELKTE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaggattgcaacagcttgtctatgaacaaaaagatattcgtggcgttattaaggaa
ttagaagagaaggggaaatcacaattagtaacggggctttcgggttcgagtcgagcgtta
tttgccagtgttattgagggcgggacgcagcggccagttatttttgtgacacataattta
tatcatgctcagaaattatatgatgatttatcgacacttgttgacgcggatcgtctttac
ttatatccagccgatgagttgatttcgtcggaacttagtatctcaagcccagaacttcgg
gggcaacgtgtggaggtactacaatttttgctgtctagaaaaccgggaatcgtgattgtg
ccagtgtctgggatgcgcaaaattttgccgccggtttcgatttgggaaaagtataatatt
tcgcttgttcaaggctcggaaattgatccagaagcgttgcagagccagcttgtaacgatg
ggatattcgagaagtgacatggttaatacgcccggtgaattcagtgtgcgtggtgggatc
atcgatatttatccgattacggaggaacacccgattcggatggaattatttgatacggaa
gtggaatcgttacgcttttttgatgtggattcgcagcgttcgatccagtcggtggaagag
tttagattggttcctgcgacggagattttgctggaaccggcatttttccctgatttggtg
aagcgggtggagaagaaattggcggcgacgctgaagcagatggcgggcgagaaggaaaaa
caacaactcgtggagaacttggaagaggatttggaattgcttcgtgacgggcaaaaacca
gacatgtttttcaagtacatcggattatgctatcctgatccagcctcattgcttgattat
gtcccgcaaaattcgattttgttatttgatgagtttgcgcggattcaagaaacggatgag
cgactagaaaaagaagaagcagagtggcaaacggagacgctagaacgtttggagacggtt
cgtgatacgaagatgagtcataatttccgagcgcttttggagacggatcggttgtcgcgt
gtttatttatcgttattccaaaaaacgccgaacagtgtgcggattgcgaagatgacgaat
attgtttataaacaaatgcaacaattccatggtcagatgagtgttttgaagacagagatg
gatagctgggcgaaaaataactatgcagtcgtaattttggcgccgtcgatggaacgtgcg
aagaaaatgaagcaaacacttgaagattacgagatggaaagcgttattttaaaagatgag
tcagaggttccgaagtttggccagacgcaatttgtgttgggaagtcttcagaatggattc
gaattaccgcttgcaaaagttgtttttatcagtgagacagagctttttaataagaaacag
cagaagccgaagaaacgccaaaagttgtcgaatgcggagcgtattcagagttattcggag
ctgaaggttggcgattatgtcgttcacgtgaatcacgggattgcgcgctatgtagggatg
gagacgctcgatattaaaggcgtgcataaagattatttgctgcttatgtatcaaggtgag
gacaaattatttatccctgtagagcagctggagctcgtgcaaaaatatgttggttcggaa
ggtaaggcgccgaagttgaataagcttggtggcgcggagtggaaacgtgtgaaaacgcgg
gttcaggcttctgtgcaagatattgcggatgatttgattaagttgtacgcggaacgtgag
gcggagcgcggttatggctatagtcctgacggcgaaatgatgcgtgaatttgaggatgct
tttccatatcaagcgacggaggatcagctgcgttcgatcatggaaattaagaaagatatg
gaacgcgaacggccgatggatcgcttgcttgtcggggacgttggttacgggaaaacggaa
gtcgcgctacgtgcggcgtttaaggcgatgatggacgggaagcaagtggcattcttagtg
ccgacaacgattctggcgcagcaacattatgaaacaatgaaagaacgattccaaggtttc
cccatcgaggttgggttgctaagccgattccgaacgcgcaaacaacaaaatgagacgcta
aaaggtttgaagtctggacacgtggatatagtagttggaacgcatcgcctgctttcaaaa
gacgtggaatatcatgatttagggttcctagttattgatgaagaacagcgattcggcgtg
acgcataaggaaaaaatcaagcatataaagacgaaagtagatgtgttgacgcttactgcg
acgccaattccgcggacgctacacatgtcgatgctcggtgttcgtgatttgtctgttatt
gagacaccgccggccaacagattcccagttcagacatacgttgtggagcagaataatgtg
ctgatacgtgaggcgattgaacgagagctcgcgcgtgacggtcaagttttcttcctgcat
aatcgtgtggattcgattcttcaaaaagcagatgagatcaagatgttggttcccgatgca
cgtgttgctgtagcgcatggtcagatgtcggaaacggagcttgagtctgtcattttgagt
ttccttgagggcgaatatgatgtattggtcacaacgacgatcatcgaaacgggtgtggat
atcccgaatgtaaatacattatttgttcaaaacgcagatcatatgggactttcccaactg
tatcaattacgtggtcgtgtcggtcgttggaaccggattgcctatgcgtatttcatgtac
cagaaggataaaattttgcgggaagaggctgagaaaaggttgcaggccattaaagaattt
acggagcttggttccggattcaaaattgcgatgcgcgatttgtcgattcgtggagcaggt
aacattttaggatctcaacagcatggctttattgactcggttggttttgatttatactcg
caaatgttgcaagaagctattgcagcgcgtcaacctaaggatgaacatgagaaaattgtt
cctgttgaaatcgatattacggtggatgcctatattccagagcattatattcaagatggt
cgccaaaaaattgagatgtacaagcgtttccgaacggttcttgatatggaggatctagaa
gaattgcgttcagatatgacggatcgcttcggcgaatatcccgagcaagtcgaatatcta
ttcacgattaccgagctgaaagtatatgcgatgcgggttgggattgagtcgatcaagcaa
gaggcgacgaaagttacgattcaattctcagaagagggcacgcaaaatatgcgcggtgat
atggtgatgcaagtcatcggtgaatatggtcgtcagattggcgtgggtatggacggtcag
cagctgagaatcacggttaatgtgggcgcgaaaccacttcaagaatggctattcgagcta
aaaacgttgacggataaactgtcggaagcgaaaaaagaaatagcagaattaaaaacagag
taa
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integrated database retrieval system
