Listeria weihenstephanensis: UE46_12055
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Entry
UE46_12055 CDS
T05637
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lwi
Listeria weihenstephanensis
Pathway
lwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UE46_12055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lwi03019
]
UE46_12055
Messenger RNA biogenesis [BR:
lwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UE46_12055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AQY51693
UniProt:
A0A1S7FWA9
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Position
2485769..2487439
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AA seq
556 aa
AA seq
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MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
IKNKEKIKGLFITHGHEDHIGGVPYLLRELNIPVYAGKLAAALIRNKLEEHGLLRQTKIY
EFEEEDVFKFRKTSISFFATTHSIPDSYGIVVKTPSGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNAEVPTFTMSERIVGESIKQIFQDVDGRIIFATFASNIYRLQQ
VVESSVAAGRKIAVFGRSMDSAITIGIELGYIQAPKDTFIEWGQLNKLPANEVTILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTISVNRTINLLFQAGAEVIHGKV
NNIHTSGHGGQQEQKLMLRLMKPKYFMPIHGEFRMQKMHAQSAFYCGVPHENSFIMENGD
VLALTADTAHVAGKIQAANVYIDGSGIGDIGNIVLRDRRVLSEEGLVIVVVSISASRNKV
MAGPDIISRGFIYMRESGNLINEAQGLLRRHLNKVMDNKATQWSEIKNEVTDTLQPFLYE
KTKRRPMILPIIMEVK
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaataatgaaacagctgttttcgcactcggtggtctaggcgaaatc
ggaaaaaacacttacggcgtgcaattccaggatgaaataattctcattgatgctggtatc
aagttcccagaggacgaactactaggcattgattacgttattcctgactacacgtattta
attaaaaataaagaaaaaatcaaaggacttttcatcacacatggtcacgaagatcatatt
ggtggcgttccttacttgcttcgcgaactaaatatcccagtttacgctggaaaactagca
gccgctcttattcgtaataaactcgaagaacacggcttattgcgccaaacgaagatttat
gagtttgaggaagaagatgttttcaaattccgcaaaacgagtatttccttcttcgcaacg
acgcatagtattccagattcatacgggattgtcgtaaaaacaccgtctgggaacatcgtg
catacaggagatttcaaatttgatttcacacctgttggcgaacctgcgaacttgactaaa
atggctgaaatcggtaaagaaggcgttctctgcttactatccgattctaccaatgctgaa
gtaccaacattcacaatgagtgagcgtatcgttggtgaaagcatcaagcaaattttccaa
gatgtcgatggtcggattatttttgccacattcgcatctaatatctatcgtttacaacaa
gtggttgaatcatcggtcgcagctggacgtaaaattgcagttttcggtcgtagtatggat
tctgcgattacaattggtatcgaacttggctacattcaagcaccaaaagatacgttcatt
gagtggggtcagctaaataagcttcctgcaaatgaagttacgattctttgtactggtagt
caaggtgaaccgatggcagcactttcgcgtattgcgaacggtacccatcgtcaaatccaa
attcaacctggcgataccgttgtcttctcgtcttcaccaatcccaggaaatacgatcagt
gtcaaccgcacgatcaacctacttttccaagctggtgcagaggttattcacggtaaagta
aacaacattcatacatctggtcacggtggccaacaagaacaaaaactaatgcttcgtctg
atgaagccaaaatacttcatgccgattcatggtgagttccggatgcaaaaaatgcatgcc
caatccgcgttttattgtggcgttcctcatgaaaatagctttatcatggaaaatggagac
gttctagccctaaccgccgatacagcgcacgttgccggtaaaatccaagcagcaaacgtg
tatatcgatggtagcggaattggcgatatcggcaatatcgtattgcgcgatcgccgcgtc
ttgtccgaagaaggcttagtcatcgttgttgtttccatcagcgcatcgagaaacaaagta
atggcgggccctgatatcatttcacgtggtttcatctacatgcgcgaatcaggcaacctc
atcaatgaagcacaaggcttgctacgccgtcatctcaacaaagtgatggataataaggca
acacagtggtctgagattaaaaacgaggtcacagacacattacaacctttcttatacgaa
aaaacaaaacgacgtccaatgatcttaccaatcatcatggaagttaagtaa
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