Leptonychotes weddellii (Weddell seal): 102725569
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Entry
102725569 CDS
T08708
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102725569 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lww03021
]
102725569 (PCF11)
03019 Messenger RNA biogenesis [BR:
lww03019
]
102725569 (PCF11)
Transcription machinery [BR:
lww03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102725569 (PCF11)
Messenger RNA biogenesis [BR:
lww03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102725569 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
102725569
NCBI-ProteinID:
XP_006749070
UniProt:
A0A2U3YZA1
LinkDB
All DBs
Position
Unknown
AA seq
1555 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPMAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KEKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTIMEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTDPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
SDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIFEGPNKLSPRI
DGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
AGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG
GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQQGVGMRFEGPH
GQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI
EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQ
QVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFNQTGPYNDPPGN
AFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFG
NFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYP
DNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQNEDQDVPDLTN
FTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV
ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE
NPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTENDTVESV
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcaatcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctagagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgttccacaa
attccccctatggcagttaaacctccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaatcgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcagagtcacaggaaagaattcctaatg
aacacattgaaccaatctgatactaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaggacttgaaaaatcaagaatctgaaagtgcaagggtgtctgatatgagcaag
agagatccaaggttaaagaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactggctggaagtagaaataaaatcatcaatggcattgtacaaaaacaggataca
ataatggaagaatcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcga
tcaagatcgagatcacccaagtctcggtcaccaattatacattctccgaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacttcgacacccaaagctgga
aagattcggcaatcaggagttaagcagtcacacatggaagagtttacgctaccttccagg
gaagagcgaaatgctaagagaagtaataaacaagatattcgagatccaaggagaataaaa
aagactgaagaggaacgaccacaagaagctgcaaatcagcattctacaaagtcaggcact
gatccaaaggagaatgtagaaaattggcaaagttccaagtctaccaaacgatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaaccttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacga
gaagagcagagatcaccattcaatgatcgttttccacttaagcgacctagatatgaagat
tcagataaaccatttgtagatagtccagcatcaagatttgccggccttgatacaaatcag
cgacttacagctttagctgaagatagaccattatttgatggacctagtaggccatcagta
acaagagatggcccaaccaagatgatttttgaaggacctaataaattaagccctagaatt
gatggacctcctacaccaggttctcttcggtttgatgggtcaccaggacaaatgggggga
ggtggccctttgagatttgaaggcccacaaggtcagttaggaggtgggtgtcctttgaga
tttgaaggtcctccaggaccagtagggacacctctgcggtttgaggggccaattggtcaa
gcaggaggaggtggttttcggtttgaaggttcccctggtctgaggtttgagggatctgca
ggtggtttgagatttgaaggaccagggggccagcctgtgggtggtctcaggtttgaggga
catcggggtcaacccgtgggtggtctaaggtttgagggacctcatggtcagcctgtgggt
ggacttagatttgataatccccgaggtcagcctgttggtggacttagatttgaagggggt
catggtccatcaggggctgcaattaggtttgatggacctcatggtcagccagcaggtggg
atcagatttgagggccctttgctacagcagggagttggaatgaggtttgagggcccccat
ggtcagtcagtagctggtttgaggtttgaaggacaacataatcagcttggtgggaacctt
aggtttgagggtccacatggtcaaccaggggttgggataaggtttgaaggaccattagtc
caacaaggaggtggaatgaggtttgagggtccttctgtgccaggaggtggcctgagaatt
gaagggcctctgggtcaaggtggtccaagatttgaaggttgtcatgctttaaggtttgat
gggcagccaggtcagccatcactcttgccaagatttgatggattgcatgggcagccaggt
cctagatttgaaagaactggtcagccaggcccacagagatttgatggaccacctggacag
caggttcaaccaagatttgatggtgtacctcaaagatttgatggcccacaacaccagcaa
gcatcaaggtttgatattcctcttggtcttcaaagcacacgatttgacaatcatccttca
cagaggcttgaatcagtatctttcaatcagactggtccatataatgatccacctggcaat
gcttttaatgccccatcccaaggactacagttccaaagacatgaacaaatgtttgattca
cctcaaggaccaaattttaatggaccacatggccctggaaaccagagcttctccaatccc
cttaacagagcttctggacactattttgatgaaaagaatcttcagagttcccaatttgga
aactttggcaatttacctgctccaataacagtaggaaatattcaggcatctcaacaggtt
cttactggtgttgctcagccggtagcatttggccaaggacaacagtttttgccagttcat
ccacaaaatcctggagcatttgttcagaatccttcaggagctcttcctaaggcatatcct
gataatcatctcagtcaggtggatgtaaatgaattattttcaaaactgctaaaaacagga
attctcaaattgtctcagcctgattcagctacaacacaagtaaatgaagttgctgctcag
cctccccctgaagaggaggaagatcaaaatgaagatcaagatgttccagatcttaccaat
tttacaattgaagaattgaaacaacgttatgatagtgttataaatcgactgtacactggt
attcagtgttactcctgtggaatgaggtttacaacatcacagacagatgtatatgcagat
cacttggactggcattatcggcaaaatagaactgaaaaagatgttagcagaaaagtcact
catagacgttggtactacagtttaacggactggatagaatttgaggaaatagctgattta
gaagaacgtgcaaagagccagttttttgaaaaggtgcacgaagaagtcgtgctcaagact
caggaggctgctaaagaaaaggagttccaaagtgtacctgctggaccagctggagcagtt
gagagttgtgaaatctgtcaagaacagtttgaacaatattgggatgaagaagaggaggaa
tggcatttaaaaaatgctattagagtagatggaaagatttatcatccatcatgttatgaa
gattatcagaatacatcttcatttgattgtacaccatctcccagcaagacaccagttgaa
aaccctttgaacattatgttgaacattgtcaaaaacgaattacaggaaccctgtgaaagt
cccaaagttaaggaagaacgaattgataccccaccagcttgtacagaggaaagcatagca
acacccactgaaattaaaacagaaaatgatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
