Leptonychotes weddellii (Weddell seal): 102729068
Help
Entry
102729068 CDS
T08708
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102729068 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lww03019
]
102729068 (XAB2)
03041 Spliceosome [BR:
lww03041
]
102729068 (XAB2)
Messenger RNA biogenesis [BR:
lww03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102729068 (XAB2)
Spliceosome [BR:
lww03041
]
Complex B
Other components
Prp19-related factors
102729068 (XAB2)
Complex C
102729068 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
HAT_PRP39_N
TPR_2
TPR_12
TPR_8
TPR_19
Suf
TPR_15
TPR_7
ARM_TT21_C
ARM_TT21
TPR_1
TPR_MalT
RPN7
PPR
DUF5575_C
Motif
Other DBs
NCBI-GeneID:
102729068
NCBI-ProteinID:
XP_030893773
UniProt:
A0A7F8RLU0
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MVVMARVSRPQRPDLVFPSYKLWYRYLKARRAQVKRRCVTDPAYEDANNCHERAFVFMHK
MPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRG
YRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLI
SQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMT
VRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSV
LLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDN
GQLDDARIILEKATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAE
YFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFL
EEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCP
PKYAKSEAGGLKLLLVYHSKNPRDLKN
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtgtttctcggccgcagcggccggacctcgttttccccagctac
aaactctggtaccgatacctgaaggcacgccgggcacaggtgaagcgtcgctgcgtgact
gaccctgcctacgaagatgccaacaactgccacgagagggcctttgtgttcatgcacaag
atgccccgtctgtggctggactactgccagttcctgatggaccagggccgcgtcacgcac
acccgccgcacgtttgaccgtgccctccgggcgctgcccatcacgcagcactctcgtatc
tggccgctgtacctgcgcttcctccgctcgcacccgctgcctgagacagccgtgcggggc
taccggcgcttcctcaagcttagccccgagagcgcagaggagtacatcgagtacctcaag
tccagcgaccggctggatgaagccgcgcagcgcctggccaccgtggtcaatgatgagcgc
ttcgtgtccaaggccggcaagtccaactaccagctgtggcacgagctctgtgacctcatc
tcccagaacccagacaaggtgcagtcgctcaatgtggatgccatcatccgcgggggcctc
acccgcttcactgaccagctaggcaagctctggtgctcgctggctgactactacatccgc
agcggccacttcgagaaggctcgagatgtgtatgaggaggccatccggaccgtgatgacc
gtgcgggacttcacccaggtgttcgacagctatgcccagtttgaggagagcatgattgca
gccaagatggagacagcctcagaattggggcgggaggaagaagatgacgtggacctggag
ctgcgcctggcccgcttcgagcagctcatcagccggcggcccctgctcctcaacagcgtc
ttgctgcgtcagaacccgcaccacgtgcacgagtggcacaagcgcgtggccctgcaccag
ggccgcccccgggagatcatcaacacatacacggaggctgtgcagacggtggacccgttc
aaggcgacaggcaagccccacacgctgtgggtcgcgtttgccaagttttacgaggacaac
gggcagctggacgatgcccgcatcatcctggagaaggccaccaaggtgagcttcaagcag
gtggacgacctggccagcgtgtggtgtgagtgtggcgagctggagctccggcacgagaac
tatgaccaggccttgcggttgttgcggaaggccaccgcgctgcccgcccgccgagccgag
tactttgacggctcggagcccgtgcagaaccgtgtgtacaagtcgctgaaggtgtggtcg
atgctcgctgacctagaggagagcctgggcaccttccagtccaccaaggccgtgtatgac
cgcatcctggacctgcgcatcgccacgccccagatcgtcatcaactacgccatgttcctg
gaggagcacaagtacttcgaggagagcttcaaggcgtacgagcgcggcatctcgctgttc
aagtggcccaacgtgtccgacatctggagcacctacctgaccaagttcatcgcccgctac
gggggccgcaagctggagcgagcgcgggacctctttgaacaggcgctggacggctgtcct
cccaaatacgccaagagtgaggcgggcgggttgaagctgctgctcgtttaccattctaaa
aatcctagggaccttaagaattaa
DBGET
integrated database retrieval system
