Leptonychotes weddellii (Weddell seal): 102735246
Help
Entry
102735246 CDS
T08708
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102735246 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lww03019
]
102735246 (EDC4)
Messenger RNA biogenesis [BR:
lww03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102735246 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102735246 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
DUF445
Beta-prop_HPS5
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
102735246
NCBI-ProteinID:
XP_006730163
UniProt:
A0A2U3XFQ6
LinkDB
All DBs
Position
Unknown
AA seq
1398 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
SANKPGLRAMPPINLQEKQVICLTGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIQQPEGTALNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRANHSTWPVRVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRSLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHT
AHEDFTFGESRPELGSDGLGSSTQGSQPDPRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPSASLQQITASPSSSSSSSSPSSSSLTAVSAMSSASAVEPSLPRPPEELTLSPKLQLDG
SLALSSSSGLQASPRSLLPSLLPGPADKLTPKAPGQVPTAASALSLELQEVEPLGLPQAS
PSRTRSPDVISSASTALSQDIPEIASEALSRGFVSSAPEGLEPDSMASAASALHLLSPRP
RPGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETCSSLAE
SPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGAKVPPPR
LPAKDWKTKGSPRASPKLKRKGKKDDGDSAVGSRLMEHQVAEPPEDWPALIWQQQRELAE
LRHSQEELLRRLCSQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQLQEQL
TQQLSQALSSAVAGRLERSLRDEIKKTVPPCVSRSLEPVTGQLSSSVATKLTAVEGSMKE
SISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRL
GTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQHQ
LHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPAAHLDCQA
QQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSLIQ
QLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGK
VARRLSLMLHGLVTPSLP
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggtcccagtgcagagagccagcggccatctaatgcc
tacaatggggatctcaatgggcttcttgtcccagaccccctctgctcaggtgatggtact
tcagcaaacaagcctggtctccgggccatgccacctattaaccttcaggaaaagcaggtc
atctgcctcacaggagatgacagctctacatgcatcgggattttggccaaggaggtggag
attgtggctagcagtgactctagcatctcaagcaaagcacggggcagcaacaaggtgaaa
atccagcctgtggccaagtatgactgggaacagaaatattactatggcaacctgatagct
gtgtccaactccttcttggcctatgccattcgggctgccaacaacggctcggcgatggtg
cgggtgatcagtgtcagcacttcagagcggaccctgctcaagggcttcacaggcagtgtg
gctgatctggcctttgcacacctcaattcctcacagctggcctgcctggatgaggcaggc
aacctgttcgtgtggcgcttggctctggttaatggcaaaattcaagaagagatcttggtc
cacatccagcagccagagggcacagcactgaaccacttccgcaggatcatctggtgcccc
ttcatcccggaggagagtgaggactgctgtgaggagggcagccccacggtggccctgttg
cacgaggaccgggctgaggtgtgggatctggacatgctccgtgccaaccacagcacctgg
cctgtgcgtgtcagccaaatcaagcaaggcttcatcgtggtaaaaggccacagcacttgc
ctgagtgaaggggccctctcacctgatgggactgtcctggctactgcaagccatgatggc
tttgtcaagttctggcagatctacattgaggggcaggatgagccaaggtgtctgcatgaa
tggaaacctcatgatgggcggtccctttcctgcctcctgttctgtgacaaccacaagaaa
caggaccctgaagtccctttctggaggttcctcatcactggtgctgaccagaatcgggag
ctcaagatgtggtgcacggtgtcctggacctgcctccagaccattcgcttctccccagat
atcttcagctcagtgagtgtaccccccagcctcaaggtttgtctggacctctcagcagaa
taccttattctcagcgacgtgcaacggaaggtcctctatgtgatggaactgctgcagaac
caggaggaaggccgtgcctgcttcagctcaatctctgagttcctgctcacccatcctgtg
ctgagcttcggtatccaggttgtgagtcgctgccgactgcggcacactgaggttctgcct
gccgaggaggagaatgacagcctaggggctgatgggacccacggagctggtgccatggag
tctgcagctggtgtgctcatcaaactcttttgtgtgcatactaaggccttgcaggatgtg
cagatccgtttccagccgcagttgaaccctgatgtggtggccccgctccccacccacact
gcccatgaggacttcacatttggagagtctcgacctgaactgggctctgatggcctgggg
tcatctacccaaggctcccagcccgacccccgacgcatagtggagctgcctgcgcccgct
gacttcctcagtctgagcagtgagaccaagcccaagctgatgacacctgacgccttcatg
acacctagcgcctccctgcagcagatcactgcatcccccagcagctccagctccagctcc
agccccagctcctcctctcttacagctgtgtctgccatgagcagcgcctcagctgtggag
ccgtccttgcccaggccgcctgaggagctgaccttgagccccaagctgcaactggatggc
agtctggcgctgagcagcagcagtggcctgcaagcaagcccacgcagcctcttgcccagc
ctgctcccagggccagctgacaaactgactcccaaagcacctgggcaggtgcctactgct
gcctctgcactgtccctggagctacaggaagtggagcccttggggctaccccaggcttct
cccagccgcacccgctcccctgatgttatctcctcagcttccactgccctgtcccaggac
atccctgagatcgcctctgaggccctgtcccgtggttttgtctcctctgctcctgagggt
cttgagccagacagtatggcctcagctgcctcagcgctacacctgctgtccccacggccc
cggccggggcccgagcttggctcccagcttggcctggatggaggccctggggatggggat
cggcatagtaccccttcccttttggaggcagcattgacccaggaggccacagcccctgac
agtcaggtctggcctacggcaccagacattactcgtgagacctgcagcagcctagcagag
agtcccaggaatggcctccaggagaagcacaagagcctggccttccaccgcccaccttat
cacctgctgcagcagcatgacagccaggacgccagtgctgagcaaagtgaccatgacgat
gaggtggctagccttgcctctgccgcaggaggctttggcgccaaagttccccctccacgg
ctaccggccaaggactggaagaccaagggttctcctcgagcctcacccaagcttaagaga
aagggcaagaaagatgacggggattcggctgtgggatcccggctcatggagcaccaggtg
gcagaacctcctgaggactggccagcactgatctggcaacagcagagggagctggcagag
ctgcggcacagccaggaagaattgctgcggcgtctttgcagccagcttgaaggcctgcag
agcactgtcacgggccacgtagaacgcgccctggagtcacggcatgagcaggagcagcgg
cggctggagcgggcactggctgaggggcagcagcggggtgggcagctgcaggagcagctg
acccaacaactgtcccaggcactgtcttcggctgtagctgggcgactggagcgcagcctg
cgggatgagatcaagaagacggtgcctccgtgtgtctccaggagcctggagccagtgaca
ggccagctgagcagctcagtggccaccaagctcacagccgtggagggtagcatgaaagag
agtatctccaagctgctaaagtccaagaacctgacagatgccattgcccgagcagctgca
gacacgttacaggggccgatgcaggccgcctaccgtgaagccttccagagtgtggtgctg
ccagcctttgagaagagctgccaggccatgttccagcagatcaatgatagcttccgactg
ggcacgcaagagtacttgcagcagctggagagccacatgaagagccggaaggcgcgagaa
caggaggcacgggagcctgtgttggcccagctgcggggcctggtcagcacactgcagggc
gccactgagcagatggcggccaccgtgtccagcagcgtccgggctgaggtgcagcaccag
ctgcacgtggctgtgggcagcctgcaggaatccattttagcacaggtacagcgcatcgtt
aagggcgaggtgagtgtagccctcaaggagcagcaggccaccgtgacatctagcatcatg
caggccatgcgttcagctgctggcacgcctgtccccgctgcccacctcgactgccaggcc
cagcaagcccatatcctgcagctgctgcagcagggccacctcaatcaggccttccagcag
gccctgacagctgctgacctgaacctggtgctgtatgtgtgtgaaactgtggacccaggg
caggtttttgggcagccaccctgcccactctcccagcctgtgctcctttccctcatccag
cagctggcctctgaccttggtactcgaactgacctcaagctcagctacctggaagaggct
gtgatgcacctggaccacagtgaccccatcactcgggaccacatgggctccgtcatggcc
caggtgcgccagaagctcttccagttcctgcaggctgagccacacaactcacttggcaaa
gtggcccggcgtctcagtctcatgctgcacggccttgtaacccctagcctcccttag
DBGET
integrated database retrieval system
