Leptonychotes weddellii (Weddell seal): 102738842
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Entry
102738842 CDS
T08708
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww04151
PI3K-Akt signaling pathway
lww04510
Focal adhesion
lww04512
ECM-receptor interaction
lww04974
Protein digestion and absorption
lww05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102738842 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102738842 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102738842 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102738842 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102738842 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lww00536
]
102738842 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lww00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102738842 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
102738842
NCBI-ProteinID:
XP_006729345
UniProt:
A0A2U3XCY5
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGAPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAASDLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKDSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTLIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcgatgtcacggccaggatgtccagaaggccggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
accgtgctctgtgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcgccacggccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacctaaagga
cctcctgggcctcagggaccagcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgcccctggacctcgtggcagagatggagagcctgggacccctggaaat
cctggcccccctggtcctcctggcccccctggtccccctggccttggtggaaactttgct
gcccagatggctggaggatttgatgagaaggctggtggcgcccagatgggagtgatgcaa
gggccgatgggcccaatgggacctcgaggacctccaggccctgctggtgctcccggacct
caaggatttcagggcaaccctggtgaacccggagaacccggtgtctccggtcccatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgatgatggcgaagctggaaagcct
ggaaaatctggtgaaagaggcccccctggccctcagggtgctcgaggcttcccgggaacc
ccaggccttcctggtgtcaagggtcacagaggctacccaggtctagatggtgctaaggga
gaagctggtgccccaggtgtgaagggagagagtggttcaccgggtgagaatggttctcca
ggcccaatgggtccccgcggcctgcccggtgagcgaggacggactggccctgctggtgct
gcaggtgcccggggcaacgacggccaaccaggccccgcaggccctccgggtcccgtgggt
cccgctggcggtcctggcttccctggtgctcccggggccaagggtgaagctggccccact
ggtgctcgcggtcctgagggtgctcaaggtcctcgcggcgaacctggtactcctgggtcc
cccgggccggctggtgcctctggtaaccccggaactgatggaattcctggagccaaagga
tctgctggtgctcctggcattgctggtgcccccggcttccctgggccccgtggtccacct
ggccctcaaggtgcaactgggcctctgggcccgaaaggtcagacgggcgagcctggtatt
gctggcttcaaaggtgaacaaggccccaaaggagaacctggccctgctggcccccaagga
gcccctggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcctggtggtgct
gggcccgtcggtccccctggagagagaggtgctcctggcaaccgtggtttcccaggtcag
gatggtctagcaggtccaaagggagcccctggagagcgagggcccagcggccttgctggt
cccaaaggagccaacggtgaccctggccgtcctggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
cccggtgaagatggccgccctggtcctccaggtcctcagggtgctcgtgggcagcctggc
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaggctggggagaag
ggactgcctggtgctcctggcctgagaggtcttcctggcaaagatggtgagacaggtgct
gcaggaccccccggaccagctggacctgctggtgaacgaggcgaacagggtgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggtgaccagggtgtccccggtgaggctggagcccccggcctcgtgggtcccaggggcgaa
cgaggtttcccaggagaacgtggctctcccggggcccagggcctccagggtccccgtggc
ctccccggcactcctggcacggatggtcccaaaggcgcatctggcccggctggcccccct
ggggctcagggccctccaggtctgcagggcatgcccggagagaggggagcggcaggcatc
gcagggcccaagggagacaggggtgatgttggcgagaaaggccctgagggagcccccggg
aaggacggtggacgaggcctgactggtcccattggcccccctgggcccgctggtgccaac
ggtgagaagggagaagttggacctcccggtcctgcaggaactgctggtgctcgcggtgcc
ccaggtgaacgcggagagactggaccccctgggcccgctggatttgcagggcctcccggt
gctgatggccagccaggtgccaagggcgagcaaggagaggctggccagaaaggtgatgct
ggtgccccaggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccactggattccctgga
gctgctggccgcgtcggacccccaggctccaatggaaaccctgggcccccggggccccct
ggtccttctggaaaagatggtcccaaaggcgctcgaggagacagtggcccccctggccgt
gccggtgaccctggtctccaaggtcctgccggaccccccggcgagaagggggagcctgga
gaggacggaccctctggccccgatggtcccccaggtccccaaggtctggctggtcagagg
ggcatcgtcggtctacctgggcagcgtggtgagagaggatttcctggcttgccaggccca
tcgggtgagcccggcaagcagggagctcctggtgcatctggagaccgaggtcctcccggc
cccgtgggtcctcctggcctgaccggtcctgctggcgaacctggacgagagggaagccct
ggtgctgacggcccccctggcagagatggcgcggctggagtcaagggtgatcgtggtgag
actggtgccgtgggcgcccccggagcccccggggcccctggctctcccggccccgctggc
ccaactggaaagcagggagaccgaggagaagctggcgcacaaggccccatgggtcccgca
ggaccggcaggagcccggggaatcccaggccctcaaggcccccggggtgacaaaggagaa
gctggggaagctggcgagaggggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcctggtcctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtcctcctggccctgtcggtccctccggcaaagatggtgctaatggaatc
cctggccccattggaccccctggtccccgtggacgttcaggcgaaactggccctgcgggc
cctcctggaaaccctggaccccctggccctccaggtccccctggccctggcatcgacatg
tctgcctttgctggcctcggtcagagagagaagggccccgaccccctgcagtacatgcgg
gctgaccaggcagccagcgacctgagacagcatgatgccgaggtggacgccaccctcaag
tccctcaacaaccagatcgagagcctccgcagccccgagggctcacgcaagaaccctgct
cgcacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatt
gaccccaaccagggctgcaccttggacgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccagcgaacgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacatatctggtttggggaaaccatcaatggtggcttccacttcagc
tacggtgatgacaacctagctcccaacacggccaacgtccagatgaccttcctacgcctg
ctgtccaccgagggctcccagaatatcacctaccactgcaaggacagcattgcctacctg
gacgaagcagccggcaacctcaagaaggccctgctcatccaaggctccaatgacgtggag
atccgggctgagggcaacagccggttcacatacactgtcctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactctgatcgagtaccggtcacagaagacctcgcgcctc
cccatcattgacattgcgcccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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