Leptonychotes weddellii (Weddell seal): 102742093
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Entry
102742093 CDS
T08708
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102742093 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lww03041
]
102742093 (DDX42)
Enzymes [BR:
lww01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102742093 (DDX42)
Spliceosome [BR:
lww03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102742093 (DDX42)
Complex B
102742093 (DDX42)
Complex C
U2 SnRNP specific factors
102742093 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
102742093
NCBI-ProteinID:
XP_006737712
UniProt:
A0A2U3Y1V9
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPLASATKGIPGFGNTGNLSGAPVTY
PSAGAQGVNNTASGSNSREGPGGGNGKRERYTENRGGSRHGHGESGNRHGDSPRHGEGGR
HGDGYRYPESSSRHADSHRHGESRHGGGGSRHGESRGANDGRNGESRKEGCNRESKVDPK
VDSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcaccaagaggggatttggctttggaggttttgct
attagtgctggaaagaaggaggaacccaaactcccacaacagtcccacagtgcctttggg
gcaaccagctcttcttctggatttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgctgaaaactcacctacccgtcag
cagttccattccaagccagcggattctgacagcgatgacgatcccttggaggcattcatg
gccgaagtggaggatcaggcggctagagacatgaaaaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaacccaactgctggtgtggttcaggaggaggaagaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgag
catgaagagataaccaacctcactcctcagcagctaatagatctccgtcataagctcaat
cttcgggtctctggtgctgcgcctcctagaccgggaagtagttttgctcactttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaaccggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatgggccaattgcagtgatagtgtgtcctactagggagctttgccag
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgatcagtcgctgta
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactaattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactcttttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacatcctgatcgaccctattcgtgtggtg
cagggagacattggagaggcgaatgaagatgtgacacagattgtagaaattctccattct
gggcctagtaaatggaactggcttacccggcgtctggtggaatttacctcttcaggaagt
gtcctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatcccagtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgttattaactatgacgtggcacgagacattgat
actcacactcataggattggccgcacaggacgagcgggtgagaaaggtgtggcttacacc
ttactgacccccaaggacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aatcagcatgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaaa
tcccgctttaaaggaggaaaaggcaaaaagctgaacattggtggaggcggcctaggctac
agggagcggcctggcctaggctcagagaacacggaccgaggaaacaacaataatgtgatg
agcaattatgaggcctacaagccctccacaggagccatgggagatcggctgacagcaatg
aaagcagctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaggcgggaagctctgctgctggcgcaagtggatggactagtgcagggagcttgaattcc
gtcccaactaattcagcccagcagggccataacagtccagacagcccccttgccagtgcc
accaagggcatcccaggctttggtaatactgggaacctcagcggtgctccagtgacctac
ccttctgctggagcccagggagtcaacaatacagcttcagggagtaacagccgagaaggg
cctgggggaggcaatgggaagagagagagatacacggagaaccggggtggcagccgtcat
ggtcatggagagagtggcaatcggcatggcgacagtccacgtcatggagagggtggtcgc
catggagatggataccgctaccccgaaagcagcagccgtcatgctgacagccaccgtcat
ggggagagtaggcacggaggaggtggcagccgacatggagagagccgaggtgcaaacgat
ggtcggaatggtgaaagcaggaaagagggttgtaatcgtgagagcaaggtggaccccaag
gtggacagcaagatggacaaggtggacagcaagacagataagacagccgatggtttcgct
gtccccgagccacccaagcgcaagaaaagtcgatgggacagttag
DBGET
integrated database retrieval system
