Leptonychotes weddellii (Weddell seal): 102743833
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Entry
102743833 CDS
T08708
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww03013
Nucleocytoplasmic transport
lww03015
mRNA surveillance pathway
lww03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102743833 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
102743833 (DDX39B)
03015 mRNA surveillance pathway
102743833 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lww03019
]
102743833 (DDX39B)
03041 Spliceosome [BR:
lww03041
]
102743833 (DDX39B)
Enzymes [BR:
lww01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102743833 (DDX39B)
Messenger RNA biogenesis [BR:
lww03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102743833 (DDX39B)
Spliceosome [BR:
lww03041
]
Complex C
Other components
EJC/TREX
102743833 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102743833 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102743833
NCBI-ProteinID:
XP_006738542
UniProt:
A0A2U3Y491
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MRSPCSVMAENDVDNELLDYEEDEVETAAGGDGAEAPTKKDVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP
GRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE
LPDEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgccttgctcggttatggcagagaacgatgtggacaatgagctcttggactat
gaagaagatgaggtggagacagcagctgggggagatggggctgaggcccctaccaagaag
gatgtcaagggctcctatgtctccatccacagctctggcttccgtgacttcctgcttaag
ccagagttgctccgggccattgttgactgtggctttgagcatccatcagaagtccagcat
gagtgcatccctcaggccattctgggaatggatgtcctgtgccaggccaagtcaggcatg
gggaagacagcagtgtttgtgctggccacactgcaacagctggagccagttactggacag
gtgtctgtgctggtgatgtgtcacactcgggagttggcttttcagatcagcaaggagtat
gagcgcttctctaaatacatgcccaatgtcaaggtcgcggtgttttttggtggtctgtct
atcaagaaggatgaagaggtgctgaagaagaactgcccgcatattgttgtggggacccct
ggccgcatcctcgccctggctcgaaataagagcctcaatctcaaacacattaaacacttt
atcttggatgaatgtgataagatgcttgaacagctcgacatgcgtcgggatgtccaggaa
atttttcgcatgaccccccacgagaagcaggtcatgatgttcagtgctaccttgagcaaa
gagatccgtcccgtctgccgcaagttcatgcaagacccaatggagatcttcgtggatgat
gagacgaagctgacgctgcatgggttgcagcagtactacgtgaaactgaaggacaacgag
aagaaccggaagctctttgaccttctcgatgtccttgagttcaatcaggtggtgatcttt
gtgaagtctgtgcagcgttgcattgccttggcccagctcctggtggagcagaacttccca
gccattgccatccaccgagggatgccccaggaggagaggctttctcggtatcagcaattt
aaagattttcaacgacgaattcttgtggctaccaacctatttggccgaggcatggatatt
gagcgggtgaacattgccttcaactatgacatgcctgaggattccgacacctacctgcat
cgggtggcccgagcaggtcggtttggcaccaagggcttggccatcacgtttgtgtcagat
gaaaatgatgccaagatcctcaatgacgtgcaggatcgctttgaagtcaatattagtgag
ctgcctgatgagatagacatttcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
