Leptonychotes weddellii (Weddell seal): 102744549
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Entry
102744549 CDS
T08708
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X2
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102744549 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lww03041
]
102744549 (DHX38)
Enzymes [BR:
lww01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102744549 (DHX38)
Spliceosome [BR:
lww03041
]
Complex C
Other components
Step II factors
102744549 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
102744549
NCBI-ProteinID:
XP_006742404
UniProt:
A0A2U3YF97
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MEDISEDASIHRLEGTDLDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEEEGSDQAGRHSRKDRHYRSARVETPSH
PGGVSEEFWERNRQRERERREHGVYASSKEEKDRKKERSRDRDCDRKRDRDERDRSRHSS
RSERDGGSERSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYRD
SERSHRQSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDGE
EGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQK
RISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGRI
VFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGV
KKEEEPDKAMTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQEL
LTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEM
GGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNT
DVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQE
DYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYSQ
LPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQ
IYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL
GVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIV
SCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKNN
NYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQA
AKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWL
AELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRS
TKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatcagtgaggatgcctccatccatcgattggaaggcactgatctggactct
caggttggcggtcttatttgcaagaccaaaagtgcagccagtgagcagcatgttttcaag
gcccctgccccccgcccttcattgctgggactggacttgttagcttccctgaaacgaagg
gagcgagaggagaaggacgatggggaggacaagaagaagtccagaatctcttcctacaag
gactgggaggagagcaaggatgaccagagggatgctgaggaggagggcagtgaccaagct
ggccgacatagccgaaaagacagacattatcgatctgctcgggtagagactccatcccat
cctggtggtgtgagtgaagagttttgggaacgcaatcggcagagagagcgggagcggcgg
gaacatggtgtctatgcctcgtccaaagaagaaaaggatcggaagaaagagagatcacgg
gatcgagactgtgaccgcaagagagacagagatgagcgggatagaagcagacacagcagc
agatccgagcgagatggagggtcagagcgcagtagaagaaatgaaccggagagcccgaga
caccgacctaaagatgcagctaccccttcaaggtctacctgggaggaagaggacagtggc
tatggctcctcaaggcgctcgcagtgggaatcgccctccccaacgccttcctatcgggat
tctgagcggagccatcgacagtccagtcgtgatcgggataggtctgtgaggagcaggtat
tcagatgacacacctctgccaaccccatcctacaaatacaacgagtgggccgatgacaga
agacacctggggtccacgccccgtctgtccaggggccgaggaagacgcgaagatggcgaa
gagggaatttcctttgacacagaagaggaacggcagcaatgggaggatgaccagaggcaa
gcggaccgggactggtacatgatggacgagggatacgatgagttccacaatcccctggcc
tactcctccgaggattacgtgagaaggcgggagcagcacctgcataaacagaagcagaag
cgcatttcggctcagcggaggcagatcaatgaggataacgagcgctgggagaccaaccgc
atgctcaccagcggggtggtccatcggctggaggtggacgaggacttcgaggaggacagc
gcggccaaggtgcacctcatggtgcataacctggttcctccctttcttgacgggcgcatt
gtcttcaccaagcagccagagcccgtgattccagtcaaggatgccacttcggacctggcc
attattgctcgaaaaggcagtcaaacagtgcggaagcacagggagcagaaggaacgcaaa
aaggctcaacacaaacactgggagctggctggaaccaagctaggagatatcatgggtgtc
aaaaaagaggaagagccagataaagctatgacagaagacggtaaagtggactataggaca
gagcagaagtttgcagatcacatgaagaaaaagagcgaagccagcagtgaatttgccaaa
aagaagtctattctggagcagcggcagtacctgcccatctttgctgtgcagcaagaactg
ctgactatcattagagataacagcattgtgatcgtggttggagagacagggagtggtaag
accactcagctgacacagtacttgcatgaagacggttacacggactatgggatgatcggg
tgcacgcagcctcggcgtgtggctgccatgtctgtggccaagagagtcagtgaagaaatg
gggggaaaccttggtgaggaggtgggttatgccatccgctttgaagactgcacgtcagaa
aacaccttgatcaaatacatgacggacgggatcctgcttcgggagtcgctccgggaagcg
gacctggatcactacagtgccatcatcatggacgaggcccatgagcgctccctcaacact
gatgtgctctttgggctgctccgggaggtggtggctcggcgttcagacctgaagctcatt
gtcacgtcagccactatggatgcagagaaatttgctgccttttttgggaatgttcccatc
ttccacatccctggtcgtaccttccctgttgacattctcttcagcaagaccccgcaggag
gactacgtggaggccgcagtgaagcagtccttacaggtgcacctgtcaggggcccctggg
gacatccttatcttcatgcctggccaagaggacattgaggtgacctcagaccagattgtg
gaacatctggaggaactggagaatgcacctgccttggccgtgctgcccatctactcccag
ctgccgtccgacctccaggctaaaatcttccagaaggctccagacggcgttcggaagtgt
atcgttgccaccaacattgctgagacgtcgctgactgtcgacggcatcatgtttgttatt
gactctggttattgcaaattaaaggtcttcaaccccaggattggcatggatgctctgcag
atctaccccatcagccaggccaatgccaaccagaggtcggggcgcgctggcaggacgggc
ccaggtcagtgtttcaggctctacacccagagtgcctacaagaacgagctcctgaccacc
acggtgcctgagatccagaggaccaacctggccaatgtggtgctgctgctcaagtccctc
ggcgtgcaggacctgctgcaattccacttcatggacccgccgcccgaggacaacatgctg
aactccatgtatcagctctggatcctaggggccctggacaacaccggtggtctaacctcg
acggggcggctgatggtggagttcccgctggacccggcgctgtccaagatgctgattgtg
tcctgtgacatgggctgcagctcggagatcctgctcatcgtgtccatgctctccgtgccg
gccatcttctacaggcccaagggccgagaggaggagagtgatcagatccgggagaagttt
gctgtccccgagagtgatcatttgacctacctgaatgtctacctgcagtggaagaataat
aattactccaccatctggtgtaatgatcattttatccatgccaaggccatgcggaaggtc
cgggaagtgcgggctcagctcaaggacatcatggtacagcagcggatgagcctggcctcg
tgtggcactgactgggacatcgtccggaagtgtatctgtgccgcctattttcaccaggca
gccaagctcaagggaatcggggagtatgtgaatatccggacagggatgccctgccacctg
caccccaccagctccctctttggaatgggctacaccccagactacatagtgtatcacgag
ctggtcatgaccaccaaggagtacatgcagtgtgtgaccgctgtggatggagagtggctg
gcggagctgggccccatgttctacagtgtgaaacaggcaggaaagtctcggcaggagaac
cgccgacgggccaaagaggaagcctctgccatggaggaggagatggcactggctgaggag
cagctgcgagcccggcggcaggagcaggaaaagcgcagccccctgggcagtgtcaggtct
acaaagatctacactccaggccggaaggagcaaggggaacccatgacccctcgccgcacg
ccagcccgctttgggctctga
DBGET
integrated database retrieval system
