Leptonychotes weddellii (Weddell seal): 102750933
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Entry
102750933 CDS
T08708
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
lww
Leptonychotes weddellii (Weddell seal)
Pathway
lww04820
Cytoskeleton in muscle cells
lww04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102750933 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102750933 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lww00536
]
102750933 (COL11A2)
Glycosaminoglycan binding proteins [BR:
lww00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102750933 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
102750933
NCBI-ProteinID:
XP_006738115
UniProt:
A0A2U3Y315
LinkDB
All DBs
Position
Unknown
AA seq
1736 aa
AA seq
DB search
MERRSRCHRLLLLVPLVLGLSAVPARAGARPVDVLRALRFPSLPDGVQRARGICLADVAY
RVSRPAQLSAPTHQLFPGGFPKDFSLLTAVRTHPGLQAPLLTLYSAQGVQQLGLELGRPF
RFLYEDQTGRPRPPAQPVFRGLSLADGKWHRVAVAVKGQSITLIVDCKKRVTRPLPRSAR
PLLDTHGVIIFGARILDEEVFEGDIQELVIVPGVQAAYESCEQKELECEGAWRERPQKQQ
SHRAQRSPKQQPSRLHRPQNQEPQRQPTESFYYDYETHYYDVRTAGTTPNYQDPSPGEEE
GILESSPLPPPEEEQTDLQVPSTADRFLTEEYGEGGTDPPSGPYDYTYGYGDDYREETEL
GPALSAETAPSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGELGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTA
GKEGTKGDPGPPGSPGKDGPAGLRGFPGERGLPGTAGGSGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGVK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGAPGVQGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPAGDD
GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQSGSPGPTGENGPPGPLGKR
GPAGSPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDVGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSA
GQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSAGGLEEIFGSLDSLREEIEQMRQP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSLVGVVQLTFLRLLSVSAHQDVSYPCSGVAQDGPLKLRGANEDELSLETSP
YVKEFRDGCQTQQGRKVLEVRTPVVEQLPVLDASFSDLGAPPRRGGLLLGPACFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcggcgcagccgctgccatcgcctcctcctgctggtaccgctggtgctggggttg
agcgcggtccccgccagggcaggtgcacgccctgtggatgtgctccgggccctgaggttc
ccctcccttcctgatggcgtccagagggcaagaggcatctgtctggctgatgtggcctac
cgagtatcccgaccagcccagctcagtgcacccacccaccagctcttcccaggaggtttt
cccaaagatttctcattgctgactgctgtccggacccaccctggcctccaggctcccctc
ctgactctctacagtgcccagggtgtccaacagctgggcctggagcttggccgacccttc
cgcttcctgtatgaggaccagactggacggcctcgacccccggctcagccagtcttccga
ggcctcagcctagcagatggcaagtggcaccgtgtggctgtggctgtgaagggccagtct
atcaccctcatagttgactgcaagaagcgagtcacccggcctctcccccgaagtgctcgt
ccactgttggacacccacggagtgattatctttggtgcccgtatcctggatgaagaagtg
tttgagggtgatatccaggagcttgtcattgtcccaggggtgcaagctgcttatgaatcc
tgtgaacagaaggagctggagtgtgaaggagcatggagggagagacctcagaaacaacag
tctcacagggcccagagatctccaaagcagcagccatcaagacttcataggccacaaaac
caggaacctcagcgacagcccactgagtctttctactatgactacgagacccactattat
gatgtgaggactgcagggacgacccctaattatcaggacccctccccaggtgaagaggaa
ggaatcctggaatcaagccccttgccaccccctgaggaggagcagacagatctccaggtc
ccctccacagccgacaggttcctgacagaggaatatggggagggtggcacagacccccca
tcagggccctacgattacacctatggctatggggacgattatcgtgaggagacggagctt
ggccctgccctgtctgcggagacagccccctcgggagccgctgcccgtggaccccggggg
ctgaagggagagaagggggagcctgcggtgctggaacctggtatgctagtggaggggcct
cctggcccagaaggccctgcggggttgattggtccccctggcatccagggcaacccaggc
ccagttggagaccctggcgagaggggcccccctggccgagcagggctccctggatcggat
ggggcccctggccctcctggcacatctctcatgctcccattccggtttggcagtggtggg
ggtgacaagggccctgtggtggcagcccaagaggctcaggcccaggcaattctgcagcag
gcacgtctggcgctccggggaccccctgggcccatgggatacacaggccgccctggaccc
ttgggacaacctgggagccctggcctgaagggagaattgggagacctaggacctcagggc
cccagaggacctcaaggcctcacaggccctcctggcaaggctgggcgaaggggccgagcg
ggtgctgatggagcccgagggatgcctggagaacctggagtgaagggtgaccgaggtttt
gatggactcccagggctacctggggagaagggacaccggggtgatactggtgcccagggc
cttcctggcccccctggtgaggatggagagcggggagatgatggggagattgggcctcga
ggactgcctggagagtcgggacctcgaggtctccttggtcccaaaggcccacctggtatt
cctggacccccgggagtccgaggcatggatggtccccatggtcccaaagggagcttggga
ccccagggagagccaggacctcctggacaacagggcactcctggaacccagggtctcccc
gggccccagggtgccattgggcctcatggagagaagggtcctcgagggaaaccagggctc
cctggcatgcctggctcagatggaccgccgggtcacccaggaaaggaaggtcctcctgga
actaaaggaaaccagggtccatctggacctcagggtcctctaggatacccgggacctcga
ggtgtcaagggtgtggatggaattcgtggtctgaagggtcataagggtgaaaagggcgag
gatggctttcctgggttcaaaggggacatgggcgtgaaaggtgacaggggagaggttgga
gttcctggttccaggggagaagacggtcccgaggggccgaagggacgcactggacccact
ggagaccctggcccccccgggctcatgggtgaaaagggcaagctgggtgttcctggtctg
cctggctaccctggacgccagggtcccaaggggtccctgggatttcctggttttcctggt
gccagtggagagaagggagcccggggcctgtcggggaagtcagggcctcggggagagcgg
ggccccacgggtccccggggtcagcggggaccccgaggtgccactgggaagtctggcgct
aagggaacatcaggtggtgatggcccccatgggccccccggagaaaggggtctccctgga
cctcaaggccccaatggatttcctggccccaaaggacctccgggtccccctgggaaggac
gggctgccaggacacccaggccagagaggagaagtgggtttccaagggaagactggcccc
cctggccctccaggggtggtgggacctcagggagcagcaggagaaaccgggcccatgggg
gagagaggtcaccccggccccccaggtcccccgggagagcagggactgactggaacagct
ggaaaagaaggaacaaagggtgaccctggtcccccagggtctccagggaaggatggacct
gctggtctgaggggcttcccaggggagagaggcctccccggcactgctggtggatccggt
ttgaagggaaacgaaggtccggccggtccccctggccctgcaggctcccctggggagcga
ggtgcagcaggatctgggggacccattggccccccggggcgcccaggcccacagggtccc
cctggagccgcaggagagaaaggtgtcccgggtgagaagggccccattggtccaactggc
cgagatggggtacagggtcctgtggggctccctggtcctgctggacccccgggtgtggca
ggagaggatggagacaagggtgaggtgggagaccccggacagaagggcactaaagggaat
aaaggtgaacatggccctcctggaccccctggaccccttggtcctgtggggcaacctgga
gcagcgggagcagatggggagcccggagctcggggaccccagggacactttggagtcaaa
ggtgacgaaggaacgagaggattcaatgggcccccaggtcccattggcctacagggtttg
ccaggcccctcgggtgagaaaggagaaacaggagatgtgggccctatgggaccacccggc
cccccaggacctcgaggcccagctggacccaatggagctgatggtccgcaaggtcccccg
ggaggtgttgggaacctgggtccccctggagagaagggggagccaggagagtcaggagct
ccaggggtccagggcgagccaggtgtcaagggcccacgcggggagcgtggggagaaagga
gagtcggggcagccaggagaggcaggaccaccagggcctaaaggccccgccggtgatgat
ggccccaaaggaaaccctggtcctgttggttttcctggtgatcccggccctcctggagaa
ggtggccctcggggccaggatggtgcgaagggtgaccgaggagaggacggcgagccagga
cagtctggatcccctggtcccactggggagaatggaccccctggaccacttggaaagcgg
ggtcctgctggctcgcctggtcctgaggggcggcaaggagagaagggagccaagggggat
cctggtgctgtgggtgccccagggaagacaggtcctgtgggtccagcaggcccagcaggg
aaacctggtcctgatggtctaaggggactcccgggctcagtgggtcagcaaggccgtcct
ggggccacaggccaggctgggcctccaggtcctgtggggcccccggggcttcctggcctt
cgaggtgatgttggagccaagggcgagaagggtcacccaggtctcatcggactgatcggg
ccccctggggagcagggagagaagggtgatcggggacttcctggccctcagggctctgct
ggacagaagggagagacgggtatcccgggagcatctggtcctattggtcctggagggcct
cctggcctccccggacctgctggccccaaaggagccaaaggagccacaggcccagctgga
cccaagggagagaagggcgtccagggtcctccaggacacccgggccccccgggcgaggtg
atccagcccctgcccatccagatgcccaagaagactcggcgctcggtggacggaagccgc
cttatgcaggaggatgaggccataccgactgggggggctccgggcagtgctggggggctg
gaggagatctttggctctcttgactccctgcgggaggagattgagcagatgaggcagccg
acagggacccaggacagccccgctcgcacctgccaggacctgaagctctgccacccggag
ctgcctgacggagagtactgggtcgaccccaaccagggctgtgctcgggatgccttccgg
gttttctgcaactttacagcggggggggaaacatgtgtgacccccagggatgacgtcacg
caattctcttacgtggactcagaaggctccctggtcggtgtggtccagctcaccttcctg
cggctgctcagcgtctcagcccaccaagatgtctcgtacccctgctctggggtggcccaa
gatggtcccctgaagctccggggggccaatgaggatgagctgagcctggagaccagcccc
tatgtcaaggaattcagagacggttgtcagacacagcaaggccggaaggtgctggaggtg
cggacacctgtggtggagcagctcccagtgctggacgcctccttctcagacctgggggcc
ccccctcggcggggagggctgctgctggggcccgcctgcttcatgggctag
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integrated database retrieval system
