Lacrimispora xylanolytica: OW255_01365
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Entry
OW255_01365 CDS
T08662
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lxa
Lacrimispora xylanolytica
Pathway
lxa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OW255_01365 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lxa03400
]
OW255_01365 (mfd)
Enzymes [BR:
lxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OW255_01365 (mfd)
DNA repair and recombination proteins [BR:
lxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OW255_01365 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
nSTAND3
UB2H
Motif
Other DBs
NCBI-ProteinID:
WAJ24204
LinkDB
All DBs
Position
279589..283128
Genome browser
AA seq
1179 aa
AA seq
DB search
MSGLFEKPLRELKDFEDLSKDLEKKAGPIGASGCMDSQKVHLMYEAAKNAGMKLVVTYDD
TRAREIFEDLSYFDTNVWLYPARDLLFFNADIHGNLLTKQRMTVFRRLMEENTGWVVTTI
DGLMDHLLPLKYLKNQVLSVKSGQTIEVETWKKRLGELGYERMGQVDGMGQFSIRGGIID
VFPLTEELPVRIELWDDEVDSIRTFDLESQRSIDQLEEIQIYPATEMTLTKTQIEDGIEA
IQKEIKKYEKDLKAQSKVEEALRIRSIINELLEGLKEGFKQQGLDGYIHYFCPDSVSFFD
YFDKDSTVVFLDEPERLKEKGETVEMEFRESMIHRLNNGYLLPGQTGLLFTAKEMLARTQ
TGTTVYLTGLEQKLTGFAVKNRYSFQVKNVSAYQNGFELLIKDLTRWKKEGYRVVLLSAS
RTRASRLAGDLREYDLRAYCPDDSGEDREVKPGEILVTYGKLHRGFEYPMIKFIVITEGD
MFGGEKKKRKRKKTTYEGTKIQNFSELSVGDYVVHEDHGLGVYRGIEKIEQDGVIKDYLK
VQYADNGNLYLPATRLDGIQKYAGADAKKPKLNRLGGEQWNKTKTRVKSAVKEIAKDLVM
LYAARQETHGFQYGEDTVWQKEFEEMFPYEETDDQWDAIEATKGDMESKKIMDRLICGDV
GYGKTEIALRAAFKAVQDGKQVVYLVPTTILAQQHYNTFAQRMKDFPIRVDLMSRFRTPG
QIKKTIEDLKRGMVDIVVGTHRVLSKDIQFKDLGLLIIDEEQRFGVTHKEKIKQLKENID
VLTLTATPIPRTLHMSLVGIRDMSVLEEPPVDRMPIQTYVMEHNDEMVREAIHRELSRDG
QVYYVYNRVSNIDEVANHIAKLVPEANVTFAHGQMHEHELEKIMFDFVNGEIDVLVCTTI
IETGLDIPNANTMIIQDADRMGLSQLYQLRGRVGRSSRISYAFLMYKRDKLLKEEAEKRL
QAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKLLNQAVLELKGER
KEEETYNTVVDCDIDAYIPTSYIKNEYQKLDIYKRISGIENEEEYMDMQDELMDRFGDIP
KPVENLLKVAALKALAHSAFVTEVNINRQEVRLTMYKNARLKVEGIPKIVEQYRGDLKFL
MGEEPRFTYLDRKKNLSTDTMISQAEVLLKQIGELSEKD
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagcggattatttgaaaaaccattgagggagcttaaggactttgaagacctctcaaaa
gatctggaaaaaaaggccgggcccataggggcaagcggctgcatggattcccaaaaggtt
cacttgatgtacgaagcagcaaagaatgctggaatgaagctggtggtgacctatgatgat
accagagccagagagatttttgaggatttaagctattttgatacaaatgtgtggttatat
ccggccagggatcttctgtttttcaatgccgatatccatgggaatttacttaccaagcag
cgtatgaccgtattccgccgcctgatggaggaaaacaccggctgggtcgttaccaccatt
gacggacttatggatcacctgcttccattaaagtatctgaaaaatcaggtgctttctgta
aagagcggccagaccattgaggtagagacctggaaaaagcgtctgggagagcttgggtac
gagcgaatgggacaggtggacggtatgggacagttctccattcgaggcggtattatcgat
gtattcccgctgacggaagagcttcctgttcgaattgagctttgggatgacgaagtagat
tccattcgtacctttgatttggaaagccaaagatccattgaccagctggaggaaattcag
atttatcctgctacggaaatgacgctgacgaaaacccagatcgaagatggaattgaggca
atccaaaaggaaataaaaaaatatgaaaaagacttaaaggcccagtcaaaggtggaggaa
gccctgcggatccgctctattatcaatgagctgttagaagggcttaaggaaggctttaag
cagcagggccttgacggctatatccattatttttgcccagacagcgtttcctttttcgac
tattttgataaagacagcacagtggtgttcttagatgagccagagcggttaaaggaaaaa
ggggaaactgtggaaatggaattccgggaaagtatgatccatcgattaaacaatggatac
cttcttcctggacagaccggtctcctttttacggctaaggagatgcttgcaagaacccag
actggaactaccgtctatttaaccggcctggaacaaaagctcactggcttcgcagtaaag
aaccgttacagctttcaggtgaaaaatgtaagtgcctaccaaaatggctttgagctttta
atcaaggacctgaccagatggaaaaaggaaggctaccgggtggttcttttatcagcctcc
agaaccagggcaagccgccttgccggagatttaagagagtatgatttaagagcctactgt
cccgatgacagcggagaagacagagaggtaaagccaggagagattctggtcacttacggt
aagcttcaccgcggctttgagtatcccatgattaaattcatcgtcattactgaaggcgat
atgtttgggggagaaaaaaagaagcgaaagaggaaaaagaccacctacgaaggcaccaaa
atccagaacttctctgaattgtccgtaggcgattatgtggttcatgaggatcacggcctt
ggagtttatcgtggaattgaaaaaatcgagcaggacggcgtgatcaaggactacttaaag
gtacaatatgcggacaacggaaacctgtatcttcctgccaccagacttgacggaattcag
aaatacgccggagccgatgctaaaaagccaaagctgaaccgcttaggcggcgagcagtgg
aacaagacaaagacaagagtcaaaagtgcagtcaaagagatcgcaaaggaccttgtcatg
ctctatgccgcaagacaggagactcatggctttcagtacggcgaggatacggtctggcaa
aaggaatttgaagaaatgtttccctatgaggagaccgacgaccagtgggatgccattgaa
gccaccaagggagacatggaaagtaagaagatcatggaccgtcttatttgcggtgacgta
ggctacggaaagacagagatcgccttaagagccgcatttaaagccgtacaggacggaaaa
caggtggtctatctggttcctaccaccattttggcccagcagcattataatacctttgcc
cagagaatgaaggacttccccatccgggtggatttgatgtcaagatttagaaccccagga
cagatcaagaagaccatcgaggatttaaaacggggcatggtggacattgtagtgggaact
caccgggtcctgtcaaaggatatacagtttaaagacctgggacttcttattatagatgaa
gagcagcgctttggcgtgacccataaagaaaagatcaagcagctaaaggaaaatatcgac
gttctaaccttgaccgcaactcctattccaagaacgctgcacatgagtctggtaggaatc
cgtgatatgagcgtgttagaggaaccgccggtagaccgtatgcccattcagacctacgtc
atggagcacaacgatgaaatggtccgtgaagccattcatagagagctttccagagacgga
caggtgtattatgtatacaatcgtgtcagcaacattgatgaggtggcaaaccacatcgca
aagctggtaccggaagccaatgtaacctttgcccatggacagatgcatgagcatgagctg
gaaaaaatcatgtttgattttgtaaatggtgaaattgatgttctggtctgcaccaccatc
attgagacaggtcttgatatccccaatgccaataccatgatcatacaggatgcggaccgt
atgggcttatcccagctttaccagctcagaggccgggtaggacgctccagccggatttcc
tatgcatttttaatgtataaacgagataagcttttaaaggaagaggcggaaaagcgtctc
caggccatccgtgaatttacagagcttggctcaggaatcaagatcgccatgcgtgactta
gaaatccgtggagccggaaacgtgctgggagcagaacagcacggacacatggaagccgtt
ggatatgacctttactgtaagctcttaaatcaggctgtattggagttaaagggagagcga
aaggaagaggaaacctacaatactgtggtggactgcgatatagatgcttatattccaact
tcctatattaagaatgaatatcagaagcttgatatctataagcgtatttccggcattgag
aatgaagaggaatacatggatatgcaggatgagctgatggaccgtttcggagatatccca
aagcctgttgagaatcttttaaaggttgcggccttaaaagcactggctcacagcgccttt
gtaacagaggtcaatataaaccgtcaggaagtccgcctcaccatgtacaaaaatgcccgc
ctgaaggtagagggaattccaaaaatcgtggagcagtaccgtggagatttaaagttcctt
atgggcgaagaaccaaggttcacctatttggatcgaaagaaaaatctgtctacagatacc
atgataagccaagcggaagtgttattaaagcagattggggaattgtctgaaaaagattga
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