Lacrimispora xylanolytica: OW255_02045
Help
Entry
OW255_02045 CDS
T08662
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lxa
Lacrimispora xylanolytica
Pathway
lxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW255_02045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxa03019
]
OW255_02045
03009 Ribosome biogenesis [BR:
lxa03009
]
OW255_02045
Enzymes [BR:
lxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OW255_02045
Messenger RNA biogenesis [BR:
lxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OW255_02045
Ribosome biogenesis [BR:
lxa03009
]
Prokaryotic type
rRNA helicases
OW255_02045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Toxin_ToxA
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WAJ24325
UniProt:
A0ABY7ADB5
LinkDB
All DBs
Position
418291..419967
Genome browser
AA seq
558 aa
AA seq
DB search
METVRFEELQLDERILRAVADMGFEEASPIQAQAIPVQLEGRDIVGQAQTGTGKTAAFGI
PMLQKIDPKVKKLQAVALCPTRELAIQVADEIRKLSKYMHGVKVLPIYGGQDIVKQIRSL
KDGTQIIIGTPGRVMDHMRRKTVKFDFVHTVVMDEADEMLNMGFLEDMETILSQLPEERQ
TVMFSATMPPAIMEIARKFQQEPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLLDM
YAPKLSVAFCNTKKQVDELVQSLQGRGYFAEGLHGDLKQIQRDRVMNSFRNGKTEILVAT
DVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRANREGIAFSFVVGKEVYKLRDIQR
YCKTKIVPQAIPSLNDVTAIKVDKILESVAGTIGETDLSNMVNIIEKKLLEEDYTSLDLA
AALLRKLMGEENEDIIDTREPRSLDELDGYFGGNSGRGRGRSNGGRGGRGDSSREREDMA
RLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRENADIVLKAMKD
VKIKGKNIHMEKANGKGK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagttagatttgaagaattacagttagatgaaagaattctgcgggctgtagca
gatatgggattcgaagaggcatctcctatccaggcccaggcaattccggtgcagttggaa
ggaagagatatcgtcggtcaggctcagactggtaccggcaaaacagcagcctttggtatt
cctatgttacagaaaatagaccctaaggttaaaaagcttcaggcggttgctctctgccct
acgagagagcttgctatccaggtagcagatgaaatccgtaagctttcaaaatatatgcat
ggcgtaaaagttcttccaatttacggcggacaggatattgtgaagcagatccgttcctta
aaagacggtacacagatcattatcggtactccaggccgtgtgatggaccatatgcgccgc
aagaccgttaagtttgattttgttcataccgttgttatggatgaggctgacgagatgctg
aacatgggattcttagaagacatggaaaccatcttaagccagcttccggaagaacgccag
actgttatgttctccgctaccatgcctccagctattatggaaatcgcaagaaagttccag
caggagccggtaactgtgaaagtggtaaaaaaagaactgaccgttccgaaagtaacccag
tattactatgaagtaaaaccaaagagcaaggtagaagttatgtgccgtcttcttgatatg
tacgcaccaaagctttccgttgctttctgtaataccaaaaagcaggtagatgagctggtt
cagtcccttcagggccgcggttattttgcagaaggtcttcatggtgacttaaagcagata
cagcgtgacagggtcatgaacagcttccgtaacggtaagacagagatccttgtggctaca
gacgttgcagcccgtggaatcgacgtagacgacgtagaagcggtattcaattacgacctt
ccccaggacgatgagtattatgtacacagaatcggccgtaccggacgtgcgaacagagaa
ggtattgcattcagctttgttgtaggcaaggaagtttacaagctccgcgacattcagcgt
tactgcaagaccaagatcgtacctcaggccattccttctttaaatgacgtaacagccatt
aaggttgataagattttagagagcgttgctggtaccatcggtgagactgatttaagtaac
atggtaaacatcattgaaaagaagcttctggaagaggattacacctctctggatttagca
gcagctcttcttagaaaattgatgggcgaagagaacgaagatatcatcgatacaagagaa
cctcgttcccttgatgagctggatggctattttggcggcaacagcggacgtggtcgtggc
agaagcaacggcggacgcggcggcagaggcgattcctccagagaaagagaagacatggct
cgtctcttcatcaacatcggcaagaaccagaacgtgaagccaggtgatatccttggagcc
atcgccggagaatccggtatgccaggtaaaatggtgggaagcatcgacatgtatgacaaa
tacaccttcgtagaagttcctagagaaaatgcggacattgtattaaaagccatgaaagat
gtaaagatcaaaggaaaaaatatccatatggaaaaagccaacggaaaaggcaaataa
DBGET
integrated database retrieval system
