Lacrimispora xylanolytica: OW255_02260
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Entry
OW255_02260 CDS
T08662
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lxa
Lacrimispora xylanolytica
Pathway
lxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW255_02260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxa03019
]
OW255_02260
Enzymes [BR:
lxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OW255_02260
Messenger RNA biogenesis [BR:
lxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OW255_02260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WAJ24368
UniProt:
A0ABY7ADQ3
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All DBs
Position
459736..461223
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AA seq
495 aa
AA seq
DB search
MQFKELNVIPEILKALEKENYSVPTPIQEKAIPIVLSGRDLLGCAQTGTGKTAAFAIPTL
QLLNEEKASKKANRNIRALVVTPTRELAIQIYENFCIYGTYTDLKSCVIFGGVSQKSQED
KLKQGVDVLIATPGRLNDLINQGLVDLRHLKIFILDEADRMLDMGFIHDVKKIIARTPAE
KQTLFFSATMPADVAKLSATMLKNPAKVEITPESSTANTIDQYLYYVDKHNKKDLLLHIL
KDESIESVLVFTRTKHGADRLVRQLAKSKVTAKAIHADKSQGARQSALSSFKERKIRVLI
ATDIAARGIDIDELSHVINFDLPDTPETYVHRIGRTGRAGLNGIAIAFCDFDEKENLGNI
EKLIRKHLKEVKEHPYPLMNNFPAVKTTQPRKDSSKAKNSSSEKASNSGKASFTRKESYS
GKASSTRKDSYTAKASSTAKTSFAGSTREEKVKAAIDPSKKYRMAADGTLKEKKSYFKTP
RRNNKGGDQARRIAK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaaagaactaaatgtgatacctgagatattaaaggctttggagaaggaaaac
tattccgttccgacaccaatacaggaaaaggcaatcccaattgttttaagcggcagagat
ttactaggatgcgcccagaccggtacaggtaaaacggctgcatttgctatccccacatta
cagctgctaaatgaagaaaaggcgtccaaaaaggcaaaccgcaatattagggccctggtc
gtaacgccaaccagagagcttgccatacaaatatatgaaaatttctgcatctatggtact
tatacagatttgaaatcctgtgtcatttttggaggtgtatcacaaaagtcacaggaggat
aaattaaaacagggcgtggatgttttaatcgccacacctggaagattaaatgacttaatc
aatcaaggcctggtggatttaagacatttaaagatatttatcttagacgaagcagaccgg
atgctggatatgggctttatccatgacgtgaaaaaaatcatagccaggaccccggcagaa
aaacagaccttattcttttccgctaccatgccggcagatgtggcaaagctttccgctacc
atgcttaaaaatccggctaaggtagagataacgccggaatcatccactgctaataccata
gatcagtatttatattatgtagataaacataataaaaaggatcttctgcttcatatcctc
aaggatgaaagcatagaatccgttcttgttttcacccggacaaagcatggagctgaccgg
ctggtaagacagttagcaaaaagtaaagtaacagcaaaagccattcacgctgataaatct
cagggagcacgccaaagtgcattaagcagcttcaaggaacgaaaaatccgagtactcatt
gcaacagatatcgctgcaagaggaattgatatcgatgagctgtctcatgtaatcaatttt
gatttacctgatactccggagacctatgtgcaccgcattggacgaacaggacgtgcggga
ttgaatggaattgccattgcattttgcgatttcgatgagaaggaaaatctcgggaatatt
gagaagttaatcagaaaacatttaaaagaggtaaaagaacatccttacccattaatgaac
aatttcccagcggtaaaaaccacacagccaaggaaagattcctcaaaagcaaagaattct
tcctcagaaaaagcttccaattcagggaaggcctcatttacaagaaaggagtcttattca
gggaaagcttcatctacaagaaaggattcctatacagcaaaggcttcttccacagcaaaa
acttctttcgcaggctctacgagagaggaaaaggtaaaagcagccattgatccaagcaag
aaatacagaatggcggcagatggtacgctgaaagaaaaaaagagttattttaaaacccca
agaagaaataataaaggcggggaccaagccagaagaatagcaaaataa
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